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CoCAS: a ChIP-on-chip analysis suite.
Benoukraf T, Cauchy P, Fenouil R, Jeanniard A, Koch F, Jaeger S, Thieffry D, Imbert J, Andrau JC, Spicuglia S, Ferrier P. Benoukraf T, et al. Among authors: andrau jc. Bioinformatics. 2009 Apr 1;25(7):954-5. doi: 10.1093/bioinformatics/btp075. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193731 Free PMC article.
Genome-wide RNA polymerase II: not genes only!
Koch F, Jourquin F, Ferrier P, Andrau JC. Koch F, et al. Among authors: andrau jc. Trends Biochem Sci. 2008 Jun;33(6):265-73. doi: 10.1016/j.tibs.2008.04.006. Epub 2008 May 6. Trends Biochem Sci. 2008. PMID: 18467100 Review.
H3K4 tri-methylation provides an epigenetic signature of active enhancers.
Pekowska A, Benoukraf T, Zacarias-Cabeza J, Belhocine M, Koch F, Holota H, Imbert J, Andrau JC, Ferrier P, Spicuglia S. Pekowska A, et al. Among authors: andrau jc. EMBO J. 2011 Aug 16;30(20):4198-210. doi: 10.1038/emboj.2011.295. EMBO J. 2011. PMID: 21847099 Free PMC article.
Divergent transcription is associated with promoters of transcriptional regulators.
Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S. Lepoivre C, et al. Among authors: andrau jc. BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914. BMC Genomics. 2013. PMID: 24365181 Free PMC article.
55 results