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CoCAS: a ChIP-on-chip analysis suite.
Benoukraf T, Cauchy P, Fenouil R, Jeanniard A, Koch F, Jaeger S, Thieffry D, Imbert J, Andrau JC, Spicuglia S, Ferrier P. Benoukraf T, et al. Bioinformatics. 2009 Apr 1;25(7):954-5. doi: 10.1093/bioinformatics/btp075. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193731 Free PMC article.
A unique H3K4me2 profile marks tissue-specific gene regulation.
Pekowska A, Benoukraf T, Ferrier P, Spicuglia S. Pekowska A, et al. Among authors: benoukraf t. Genome Res. 2010 Nov;20(11):1493-502. doi: 10.1101/gr.109389.110. Epub 2010 Sep 14. Genome Res. 2010. PMID: 20841431 Free PMC article.
H3K4 tri-methylation provides an epigenetic signature of active enhancers.
Pekowska A, Benoukraf T, Zacarias-Cabeza J, Belhocine M, Koch F, Holota H, Imbert J, Andrau JC, Ferrier P, Spicuglia S. Pekowska A, et al. Among authors: benoukraf t. EMBO J. 2011 Aug 16;30(20):4198-210. doi: 10.1038/emboj.2011.295. EMBO J. 2011. PMID: 21847099 Free PMC article.
Characterisation of genome-wide PLZF/RARA target genes.
Spicuglia S, Vincent-Fabert C, Benoukraf T, Tibéri G, Saurin AJ, Zacarias-Cabeza J, Grimwade D, Mills K, Calmels B, Bertucci F, Sieweke M, Ferrier P, Duprez E. Spicuglia S, et al. Among authors: benoukraf t. PLoS One. 2011;6(9):e24176. doi: 10.1371/journal.pone.0024176. Epub 2011 Sep 20. PLoS One. 2011. PMID: 21949697 Free PMC article.
Pasha: a versatile R package for piling chromatin HTS data.
Fenouil R, Descostes N, Spinelli L, Koch F, Maqbool MA, Benoukraf T, Cauchy P, Innocenti C, Ferrier P, Andrau JC. Fenouil R, et al. Among authors: benoukraf t. Bioinformatics. 2016 Aug 15;32(16):2528-30. doi: 10.1093/bioinformatics/btw206. Epub 2016 Apr 22. Bioinformatics. 2016. PMID: 27153642
49 results