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CoCAS: a ChIP-on-chip analysis suite.
Benoukraf T, Cauchy P, Fenouil R, Jeanniard A, Koch F, Jaeger S, Thieffry D, Imbert J, Andrau JC, Spicuglia S, Ferrier P. Benoukraf T, et al. Among authors: fenouil r. Bioinformatics. 2009 Apr 1;25(7):954-5. doi: 10.1093/bioinformatics/btp075. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193731 Free PMC article.
Pasha: a versatile R package for piling chromatin HTS data.
Fenouil R, Descostes N, Spinelli L, Koch F, Maqbool MA, Benoukraf T, Cauchy P, Innocenti C, Ferrier P, Andrau JC. Fenouil R, et al. Bioinformatics. 2016 Aug 15;32(16):2528-30. doi: 10.1093/bioinformatics/btw206. Epub 2016 Apr 22. Bioinformatics. 2016. PMID: 27153642
Divergent transcription is associated with promoters of transcriptional regulators.
Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S. Lepoivre C, et al. Among authors: fenouil r. BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914. BMC Genomics. 2013. PMID: 24365181 Free PMC article.
Transcription-dependent generation of a specialized chromatin structure at the TCRβ locus.
Zacarías-Cabeza J, Belhocine M, Vanhille L, Cauchy P, Koch F, Pekowska A, Fenouil R, Bergon A, Gut M, Gut I, Eick D, Imbert J, Ferrier P, Andrau JC, Spicuglia S. Zacarías-Cabeza J, et al. Among authors: fenouil r. J Immunol. 2015 Apr 1;194(7):3432-43. doi: 10.4049/jimmunol.1400789. Epub 2015 Mar 2. J Immunol. 2015. PMID: 25732733
Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation.
Cauchy P, Maqbool MA, Zacarias-Cabeza J, Vanhille L, Koch F, Fenouil R, Gut M, Gut I, Santana MA, Griffon A, Imbert J, Moraes-Cabé C, Bories JC, Ferrier P, Spicuglia S, Andrau JC. Cauchy P, et al. Among authors: fenouil r. Nucleic Acids Res. 2016 May 5;44(8):3567-85. doi: 10.1093/nar/gkv1475. Epub 2015 Dec 15. Nucleic Acids Res. 2016. PMID: 26673693 Free PMC article.
Site- and allele-specific polycomb dysregulation in T-cell leukaemia.
Navarro JM, Touzart A, Pradel LC, Loosveld M, Koubi M, Fenouil R, Le Noir S, Maqbool MA, Morgado E, Gregoire C, Jaeger S, Mamessier E, Pignon C, Hacein-Bey-Abina S, Malissen B, Gut M, Gut IG, Dombret H, Macintyre EA, Howe SJ, Gaspar HB, Thrasher AJ, Ifrah N, Payet-Bornet D, Duprez E, Andrau JC, Asnafi V, Nadel B. Navarro JM, et al. Among authors: fenouil r. Nat Commun. 2015 Jan 23;6:6094. doi: 10.1038/ncomms7094. Nat Commun. 2015. PMID: 25615415 Free PMC article.
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