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A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Among authors: delcher al. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
A preprocessor for shotgun assembly of large genomes.
Roberts M, Hunt BR, Yorke JA, Bolanos RA, Delcher AL. Roberts M, et al. Among authors: delcher al. J Comput Biol. 2004;11(4):734-52. doi: 10.1089/cmb.2004.11.734. J Comput Biol. 2004. PMID: 15579242
Assembly of large genomes using second-generation sequencing.
Schatz MC, Delcher AL, Salzberg SL. Schatz MC, et al. Among authors: delcher al. Genome Res. 2010 Sep;20(9):1165-73. doi: 10.1101/gr.101360.109. Epub 2010 May 27. Genome Res. 2010. PMID: 20508146 Free PMC article.
GAGE: A critical evaluation of genome assemblies and assembly algorithms.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Among authors: delcher al. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.
MUMmer4: A fast and versatile genome alignment system.
Marçais G, Delcher AL, Phillippy AM, Coston R, Salzberg SL, Zimin A. Marçais G, et al. Among authors: delcher al. PLoS Comput Biol. 2018 Jan 26;14(1):e1005944. doi: 10.1371/journal.pcbi.1005944. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29373581 Free PMC article.
Comparative genome assembly.
Pop M, Phillippy A, Delcher AL, Salzberg SL. Pop M, et al. Among authors: delcher al. Brief Bioinform. 2004 Sep;5(3):237-48. doi: 10.1093/bib/5.3.237. Brief Bioinform. 2004. PMID: 15383210
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Delcher AL, et al. Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19. Bioinformatics. 2007. PMID: 17237039 Free PMC article.
Minimus: a fast, lightweight genome assembler.
Sommer DD, Delcher AL, Salzberg SL, Pop M. Sommer DD, et al. Among authors: delcher al. BMC Bioinformatics. 2007 Feb 26;8:64. doi: 10.1186/1471-2105-8-64. BMC Bioinformatics. 2007. PMID: 17324286 Free PMC article.
56 results