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104 results

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A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Among authors: yorke ja. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
A preprocessor for shotgun assembly of large genomes.
Roberts M, Hunt BR, Yorke JA, Bolanos RA, Delcher AL. Roberts M, et al. Among authors: yorke ja. J Comput Biol. 2004;11(4):734-52. doi: 10.1089/cmb.2004.11.734. J Comput Biol. 2004. PMID: 15579242
Assembly reconciliation.
Zimin AV, Smith DR, Sutton G, Yorke JA. Zimin AV, et al. Among authors: yorke ja. Bioinformatics. 2008 Jan 1;24(1):42-5. doi: 10.1093/bioinformatics/btm542. Epub 2007 Dec 5. Bioinformatics. 2008. PMID: 18057021
GAGE: A critical evaluation of genome assemblies and assembly algorithms.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Among authors: yorke ja. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.
The MaSuRCA genome assembler.
Zimin AV, Marçais G, Puiu D, Roberts M, Salzberg SL, Yorke JA. Zimin AV, et al. Among authors: yorke ja. Bioinformatics. 2013 Nov 1;29(21):2669-77. doi: 10.1093/bioinformatics/btt476. Epub 2013 Aug 29. Bioinformatics. 2013. PMID: 23990416 Free PMC article.
Sequencing and assembly of the 22-gb loblolly pine genome.
Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH. Zimin A, et al. Among authors: yorke ja. Genetics. 2014 Mar;196(3):875-90. doi: 10.1534/genetics.113.159715. Genetics. 2014. PMID: 24653210 Free PMC article.
QuorUM: An Error Corrector for Illumina Reads.
Marçais G, Yorke JA, Zimin A. Marçais G, et al. Among authors: yorke ja. PLoS One. 2015 Jun 17;10(6):e0130821. doi: 10.1371/journal.pone.0130821. eCollection 2015. PLoS One. 2015. PMID: 26083032 Free PMC article.
104 results