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Sim4cc: a cross-species spliced alignment program.
Zhou L, Pertea M, Delcher AL, Florea L. Zhou L, et al. Among authors: pertea m. Nucleic Acids Res. 2009 Jun;37(11):e80. doi: 10.1093/nar/gkp319. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429899 Free PMC article.
Major data analysis errors invalidate cancer microbiome findings.
Gihawi A, Ge Y, Lu J, Puiu D, Xu A, Cooper CS, Brewer DS, Pertea M, Salzberg SL. Gihawi A, et al. Among authors: pertea m. mBio. 2023 Oct 31;14(5):e0160723. doi: 10.1128/mbio.01607-23. Epub 2023 Oct 9. mBio. 2023. PMID: 37811944 Free PMC article.
Structure-guided isoform identification for the human transcriptome.
Sommer MJ, Cha S, Varabyou A, Rincon N, Park S, Minkin I, Pertea M, Steinegger M, Salzberg SL. Sommer MJ, et al. Among authors: pertea m. Elife. 2022 Dec 15;11:e82556. doi: 10.7554/eLife.82556. Elife. 2022. PMID: 36519529 Free PMC article.
Interpolated Markov models for eukaryotic gene finding.
Salzberg SL, Pertea M, Delcher AL, Gardner MJ, Tettelin H. Salzberg SL, et al. Among authors: pertea m. Genomics. 1999 Jul 1;59(1):24-31. doi: 10.1006/geno.1999.5854. Genomics. 1999. PMID: 10395796 Free article.
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ. Carlton JM, et al. Among authors: pertea m. Science. 2007 Jan 12;315(5809):207-12. doi: 10.1126/science.1132894. Science. 2007. PMID: 17218520 Free PMC article.
Draft genome of the filarial nematode parasite Brugia malayi.
Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL. Ghedin E, et al. Among authors: pertea m. Science. 2007 Sep 21;317(5845):1756-60. doi: 10.1126/science.1145406. Science. 2007. PMID: 17885136 Free PMC article.
Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum.
Gardner MJ, Tettelin H, Carucci DJ, Cummings LM, Aravind L, Koonin EV, Shallom S, Mason T, Yu K, Fujii C, Pederson J, Shen K, Jing J, Aston C, Lai Z, Schwartz DC, Pertea M, Salzberg S, Zhou L, Sutton GG, Clayton R, White O, Smith HO, Fraser CM, Adams MD, Venter JC, Hoffman SL. Gardner MJ, et al. Among authors: pertea m. Science. 1998 Nov 6;282(5391):1126-32. doi: 10.1126/science.282.5391.1126. Science. 1998. PMID: 9804551
109 results