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Page 1
Modeling and managing experimental data using FuGE.
Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW. Jones AR, et al. OMICS. 2009 Jun;13(3):239-51. doi: 10.1089/omi.2008.0080. OMICS. 2009. PMID: 19441879
FuGE: Functional Genomics Experiment Object Model.
Jones AR, Pizarro A, Spellman P, Miller M; FuGE Working Group. Jones AR, et al. OMICS. 2006 Summer;10(2):179-84. doi: 10.1089/omi.2006.10.179. OMICS. 2006. PMID: 16901224 Review.
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France.
Orchard S, Montechi-Palazzi L, Deutsch EW, Binz PA, Jones AR, Paton N, Pizarro A, Creasy DM, Wojcik J, Hermjakob H. Orchard S, et al. Among authors: jones ar. Proteomics. 2007 Oct;7(19):3436-40. doi: 10.1002/pmic.200700658. Proteomics. 2007. PMID: 17907277
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK Jr, Laursen K, Oliver SG, Paton NW, Sansone SA, Sarkans U, Stoeckert CJ Jr, Taylor CF, Whetzel PL, White JA, Spellman P, Pizarro A. Jones AR, et al. Nat Biotechnol. 2007 Oct;25(10):1127-33. doi: 10.1038/nbt1347. Nat Biotechnol. 2007. PMID: 17921998
Guidelines for reporting the use of gel electrophoresis in proteomics.
Gibson F, Anderson L, Babnigg G, Baker M, Berth M, Binz PA, Borthwick A, Cash P, Day BW, Friedman DB, Garland D, Gutstein HB, Hoogland C, Jones NA, Khan A, Klose J, Lamond AI, Lemkin PF, Lilley KS, Minden J, Morris NJ, Paton NW, Pisano MR, Prime JE, Rabilloud T, Stead DA, Taylor CF, Voshol H, Wipat A, Jones AR. Gibson F, et al. Among authors: jones ar, jones na. Nat Biotechnol. 2008 Aug;26(8):863-4. doi: 10.1038/nbt0808-863. Nat Biotechnol. 2008. PMID: 18688234 Free article. No abstract available.
A toolkit for capturing and sharing FuGE experiments.
Belhajjame K, Jones AR, Paton NW. Belhajjame K, et al. Among authors: jones ar. Bioinformatics. 2008 Nov 15;24(22):2647-9. doi: 10.1093/bioinformatics/btn496. Epub 2008 Sep 17. Bioinformatics. 2008. PMID: 18801749
FuGEFlow: data model and markup language for flow cytometry.
Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly RP, Brinkman RR. Qian Y, et al. Among authors: jones ar. BMC Bioinformatics. 2009 Jun 16;10:184. doi: 10.1186/1471-2105-10-184. BMC Bioinformatics. 2009. PMID: 19531228 Free PMC article.
688 results