Holford ME - Search Results

1

Semantic Web-based integration of cancer pathways and allele frequency data.

Holford ME, Rajeevan H, Zhao H, Kidd KK, Cheung KH. Holford ME, et al. Cancer Inform. 2009 Jan 15;8:19-30. doi: 10.4137/cin.s1006. Cancer Inform. 2009. PMID: 19458791 Free PMC article.

2

Approaches to neuroscience data integration.

Cheung KH, Lim E, Samwald M, Chen H, Marenco L, Holford ME, Morse TM, Mutalik P, Shepherd GM, Miller PL. Cheung KH, et al. Among authors: holford me. Brief Bioinform. 2009 Jul;10(4):345-53. doi: 10.1093/bib/bbp029. Brief Bioinform. 2009. PMID: 19505888 Free PMC article.

3

Using semantic web rules to reason on an ontology of pseudogenes.

Holford ME, Khurana E, Cheung KH, Gerstein M. Holford ME, et al. Bioinformatics. 2010 Jun 15;26(12):i71-8. doi: 10.1093/bioinformatics/btq173. Bioinformatics. 2010. PMID: 20529940 Free PMC article.

4

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.

Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H. Pan D, et al. BMC Bioinformatics. 2003 Nov 7;4:56. doi: 10.1186/1471-2105-4-56. BMC Bioinformatics. 2003. PMID: 14604444 Free PMC article.

5

A semantic web framework to integrate cancer omics data with biological knowledge.

Holford ME, McCusker JP, Cheung KH, Krauthammer M. Holford ME, et al. BMC Bioinformatics. 2012 Jan 25;13 Suppl 1(Suppl 1):S10. doi: 10.1186/1471-2105-13-S1-S10. BMC Bioinformatics. 2012. PMID: 22373303 Free PMC article.

6

VitaPad: visualization tools for the analysis of pathway data.

Holford M, Li N, Nadkarni P, Zhao H. Holford M, et al. Bioinformatics. 2005 Apr 15;21(8):1596-602. doi: 10.1093/bioinformatics/bti153. Epub 2004 Nov 25. Bioinformatics. 2005. PMID: 15564306

7

Pathway analysis using random forests classification and regression.

Pang H, Lin A, Holford M, Enerson BE, Lu B, Lawton MP, Floyd E, Zhao H. Pang H, et al. Bioinformatics. 2006 Aug 15;22(16):2028-36. doi: 10.1093/bioinformatics/btl344. Epub 2006 Jun 29. Bioinformatics. 2006. PMID: 16809386

8

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies.

Jiao Y, Tausta SL, Gandotra N, Sun N, Liu T, Clay NK, Ceserani T, Chen M, Ma L, Holford M, Zhang HY, Zhao H, Deng XW, Nelson T. Jiao Y, et al. Nat Genet. 2009 Feb;41(2):258-63. doi: 10.1038/ng.282. Epub 2009 Jan 4. Nat Genet. 2009. PMID: 19122662

9

Mutadelic: mutation analysis using description logic inferencing capabilities.

Holford ME, Krauthammer M. Holford ME, et al. Bioinformatics. 2015 Dec 1;31(23):3742-7. doi: 10.1093/bioinformatics/btv467. Epub 2015 Aug 12. Bioinformatics. 2015. PMID: 26272983 Free PMC article.

10

Using 3D printed eggs to examine the egg-rejection behaviour of wild birds.

Igic B, Nunez V, Voss HU, Croston R, Aidala Z, López AV, Van Tatenhove A, Holford ME, Shawkey MD, Hauber ME. Igic B, et al. Among authors: holford me. PeerJ. 2015 May 26;3:e965. doi: 10.7717/peerj.965. eCollection 2015. PeerJ. 2015. PMID: 26038720 Free PMC article.

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