Sun W - Search Results

1

Integrated study of copy number states and genotype calls using high-density SNP arrays.

Sun W, Wright FA, Tang Z, Nordgard SH, Van Loo P, Yu T, Kristensen VN, Perou CM. Sun W, et al. Nucleic Acids Res. 2009 Sep;37(16):5365-77. doi: 10.1093/nar/gkp493. Epub 2009 Jul 6. Nucleic Acids Res. 2009. PMID: 19581427 Free PMC article.

2

The association between copy number aberration, DNA methylation and gene expression in tumor samples.

Sun W, Bunn P, Jin C, Little P, Zhabotynsky V, Perou CM, Hayes DN, Chen M, Lin DY. Sun W, et al. Nucleic Acids Res. 2018 Apr 6;46(6):3009-3018. doi: 10.1093/nar/gky131. Nucleic Acids Res. 2018. PMID: 29529299 Free PMC article.

3

Allele-specific copy number analysis of tumors.

Van Loo P, Nordgard SH, Lingjærde OC, Russnes HG, Rye IH, Sun W, Weigman VJ, Marynen P, Zetterberg A, Naume B, Perou CM, Børresen-Dale AL, Kristensen VN. Van Loo P, et al. Among authors: sun w. Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16910-5. doi: 10.1073/pnas.1009843107. Epub 2010 Sep 13. Proc Natl Acad Sci U S A. 2010. PMID: 20837533 Free PMC article.

4

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors.

Wilkerson MD, Cabanski CR, Sun W, Hoadley KA, Walter V, Mose LE, Troester MA, Hammerman PS, Parker JS, Perou CM, Hayes DN. Wilkerson MD, et al. Among authors: sun w. Nucleic Acids Res. 2014 Jul;42(13):e107. doi: 10.1093/nar/gku489. Epub 2014 Jun 26. Nucleic Acids Res. 2014. PMID: 24970867 Free PMC article.

5

SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling.

Silva GO, Siegel MB, Mose LE, Parker JS, Sun W, Perou CM, Chen M. Silva GO, et al. Among authors: sun w. Genome Biol. 2017 Apr 8;18(1):66. doi: 10.1186/s13059-017-1193-3. Genome Biol. 2017. PMID: 28390427 Free PMC article.

6

A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array.

Yu T, Ye H, Sun W, Li KC, Chen Z, Jacobs S, Bailey DK, Wong DT, Zhou X. Yu T, et al. Among authors: sun w. BMC Bioinformatics. 2007 May 3;8:145. doi: 10.1186/1471-2105-8-145. BMC Bioinformatics. 2007. PMID: 17477871 Free PMC article.

7

MicroRNA expression in the livers of inbred mice.

Gatti DM, Lu L, Williams RW, Sun W, Wright FA, Threadgill DW, Rusyn I. Gatti DM, et al. Among authors: sun w. Mutat Res. 2011 Sep 1;714(1-2):126-33. doi: 10.1016/j.mrfmmm.2011.05.007. Epub 2011 May 14. Mutat Res. 2011. PMID: 21616085 Free PMC article.

8

Improving detection of copy-number variation by simultaneous bias correction and read-depth segmentation.

Szatkiewicz JP, Wang W, Sullivan PF, Wang W, Sun W. Szatkiewicz JP, et al. Among authors: sun w. Nucleic Acids Res. 2013 Feb 1;41(3):1519-32. doi: 10.1093/nar/gks1363. Epub 2012 Dec 28. Nucleic Acids Res. 2013. PMID: 23275535 Free PMC article.

9

Proper Use of Allele-Specific Expression Improves Statistical Power for cis-eQTL Mapping with RNA-Seq Data.

Hu YJ, Sun W, Tzeng JY, Perou CM. Hu YJ, et al. Among authors: sun w. J Am Stat Assoc. 2015;110(511):962-974. doi: 10.1080/01621459.2015.1038449. Epub 2015 Nov 7. J Am Stat Assoc. 2015. PMID: 26568645 Free PMC article.

10

Incorporating Nonlinear Relationships in Microarray Missing Value Imputation.

Yu T, Peng H, Sun W. Yu T, et al. Among authors: sun w. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):723-31. doi: 10.1109/TCBB.2010.73. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 20733236 Free PMC article.

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