Smith AD - Search Results

1

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing.

Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB. Hodges E, et al. Among authors: smith ad. Genome Res. 2009 Sep;19(9):1593-605. doi: 10.1101/gr.095190.109. Epub 2009 Jul 6. Genome Res. 2009. PMID: 19581485 Free PMC article.

2

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements.

Schlesinger F, Smith AD, Gingeras TR, Hannon GJ, Hodges E. Schlesinger F, et al. Among authors: smith ad. Genome Res. 2013 Oct;23(10):1601-14. doi: 10.1101/gr.157271.113. Epub 2013 Jun 28. Genome Res. 2013. PMID: 23811145 Free PMC article.

3

Evolutionary expansion of DNA hypomethylation in the mammalian germline genome.

Qu J, Hodges E, Molaro A, Gagneux P, Dean MD, Hannon GJ, Smith AD. Qu J, et al. Among authors: smith ad. Genome Res. 2018 Feb;28(2):145-158. doi: 10.1101/gr.225896.117. Epub 2017 Dec 19. Genome Res. 2018. PMID: 29259021 Free PMC article.

4

DNA motifs in human and mouse proximal promoters predict tissue-specific expression.

Smith AD, Sumazin P, Xuan Z, Zhang MQ. Smith AD, et al. Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6275-80. doi: 10.1073/pnas.0508169103. Epub 2006 Apr 10. Proc Natl Acad Sci U S A. 2006. PMID: 16606849 Free PMC article.

5

Tissue-specific regulatory elements in mammalian promoters.

Smith AD, Sumazin P, Zhang MQ. Smith AD, et al. Mol Syst Biol. 2007;3:73. doi: 10.1038/msb4100114. Epub 2007 Jan 16. Mol Syst Biol. 2007. PMID: 17224917 Free PMC article.

6

Using quality scores and longer reads improves accuracy of Solexa read mapping.

Smith AD, Xuan Z, Zhang MQ. Smith AD, et al. BMC Bioinformatics. 2008 Feb 28;9:128. doi: 10.1186/1471-2105-9-128. BMC Bioinformatics. 2008. PMID: 18307793 Free PMC article.

7

Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment.

Hodges E, Molaro A, Dos Santos CO, Thekkat P, Song Q, Uren PJ, Park J, Butler J, Rafii S, McCombie WR, Smith AD, Hannon GJ. Hodges E, et al. Among authors: smith ad. Mol Cell. 2011 Oct 7;44(1):17-28. doi: 10.1016/j.molcel.2011.08.026. Epub 2011 Sep 15. Mol Cell. 2011. PMID: 21924933 Free PMC article.

8

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates.

Molaro A, Hodges E, Fang F, Song Q, McCombie WR, Hannon GJ, Smith AD. Molaro A, et al. Among authors: smith ad. Cell. 2011 Sep 16;146(6):1029-41. doi: 10.1016/j.cell.2011.08.016. Cell. 2011. PMID: 21925323 Free PMC article.

9

Genomic landscape of human allele-specific DNA methylation.

Fang F, Hodges E, Molaro A, Dean M, Hannon GJ, Smith AD. Fang F, et al. Among authors: smith ad. Proc Natl Acad Sci U S A. 2012 May 8;109(19):7332-7. doi: 10.1073/pnas.1201310109. Epub 2012 Apr 20. Proc Natl Acad Sci U S A. 2012. PMID: 22523239 Free PMC article.

10

Two waves of de novo methylation during mouse germ cell development.

Molaro A, Falciatori I, Hodges E, Aravin AA, Marran K, Rafii S, McCombie WR, Smith AD, Hannon GJ. Molaro A, et al. Among authors: smith ad. Genes Dev. 2014 Jul 15;28(14):1544-9. doi: 10.1101/gad.244350.114. Genes Dev. 2014. PMID: 25030694 Free PMC article.

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