Brudno M - Search Results

1

Medvedev P, Brudno M. Medvedev P, et al. Among authors: brudno m. J Comput Biol. 2009 Aug;16(8):1101-16. doi: 10.1089/cmb.2009.0047. J Comput Biol. 2009. PMID: 19645596 Free PMC article.

2

An introduction to the Lagan alignment toolkit.

Brudno M. Brudno M. Methods Mol Biol. 2007;395:205-20. doi: 10.1007/978-1-59745-514-5_13. Methods Mol Biol. 2007. PMID: 17993676

3

A robust framework for detecting structural variations in a genome.

Lee S, Cheran E, Brudno M. Lee S, et al. Among authors: brudno m. Bioinformatics. 2008 Jul 1;24(13):i59-67. doi: 10.1093/bioinformatics/btn176. Bioinformatics. 2008. PMID: 18586745 Free PMC article.

4

SHRiMP: accurate mapping of short color-space reads.

Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, Brudno M. Rumble SM, et al. Among authors: brudno m. PLoS Comput Biol. 2009 May;5(5):e1000386. doi: 10.1371/journal.pcbi.1000386. Epub 2009 May 22. PLoS Comput Biol. 2009. PMID: 19461883 Free PMC article.

5

A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG).

Brudno M, Medvedev P, Stoye J, De La Vega FM. Brudno M, et al. Bioinformatics. 2009 Nov 1;25(21):2863-4. doi: 10.1093/bioinformatics/btp525. Epub 2009 Sep 24. Bioinformatics. 2009. PMID: 19783529 No abstract available.

6

Computational methods for discovering structural variation with next-generation sequencing.

Medvedev P, Stanciu M, Brudno M. Medvedev P, et al. Among authors: brudno m. Nat Methods. 2009 Nov;6(11 Suppl):S13-20. doi: 10.1038/nmeth.1374. Nat Methods. 2009. PMID: 19844226 Review.

7

Genome variation discovery with high-throughput sequencing data.

Dalca AV, Brudno M. Dalca AV, et al. Among authors: brudno m. Brief Bioinform. 2010 Jan;11(1):3-14. doi: 10.1093/bib/bbp058. Epub 2010 Jan 6. Brief Bioinform. 2010. PMID: 20053733

8

Savant: genome browser for high-throughput sequencing data.

Fiume M, Williams V, Brook A, Brudno M. Fiume M, et al. Among authors: brudno m. Bioinformatics. 2010 Aug 15;26(16):1938-44. doi: 10.1093/bioinformatics/btq332. Epub 2010 Jun 20. Bioinformatics. 2010. PMID: 20562449 Free PMC article.

9

Detecting copy number variation with mated short reads.

Medvedev P, Fiume M, Dzamba M, Smith T, Brudno M. Medvedev P, et al. Among authors: brudno m. Genome Res. 2010 Nov;20(11):1613-22. doi: 10.1101/gr.106344.110. Epub 2010 Aug 30. Genome Res. 2010. PMID: 20805290 Free PMC article.

10

SCARPA: scaffolding reads with practical algorithms.

Donmez N, Brudno M. Donmez N, et al. Among authors: brudno m. Bioinformatics. 2013 Feb 15;29(4):428-34. doi: 10.1093/bioinformatics/bts716. Epub 2012 Dec 29. Bioinformatics. 2013. PMID: 23274213

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