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Maximum likelihood genome assembly.
Medvedev P, Brudno M. Medvedev P, et al. J Comput Biol. 2009 Aug;16(8):1101-16. doi: 10.1089/cmb.2009.0047. J Comput Biol. 2009. PMID: 19645596 Free PMC article.
Detecting copy number variation with mated short reads.
Medvedev P, Fiume M, Dzamba M, Smith T, Brudno M. Medvedev P, et al. Genome Res. 2010 Nov;20(11):1613-22. doi: 10.1101/gr.106344.110. Epub 2010 Aug 30. Genome Res. 2010. PMID: 20805290 Free PMC article.
Rearrangement models and single-cut operations.
Bergeron A, Medvedev P, Stoye J. Bergeron A, et al. Among authors: medvedev p. J Comput Biol. 2010 Sep;17(9):1213-25. doi: 10.1089/cmb.2010.0091. J Comput Biol. 2010. PMID: 20874405
On the representation of de Bruijn graphs.
Chikhi R, Limasset A, Jackman S, Simpson JT, Medvedev P. Chikhi R, et al. Among authors: medvedev p. J Comput Biol. 2015 May;22(5):336-52. doi: 10.1089/cmb.2014.0160. Epub 2015 Jan 28. J Comput Biol. 2015. PMID: 25629448
Safe and Complete Contig Assembly Through Omnitigs.
Tomescu AI, Medvedev P. Tomescu AI, et al. Among authors: medvedev p. J Comput Biol. 2017 Jun;24(6):590-602. doi: 10.1089/cmb.2016.0141. Epub 2016 Oct 17. J Comput Biol. 2017. PMID: 27749096
AllSome Sequence Bloom Trees.
Sun C, Harris RS, Chikhi R, Medvedev P. Sun C, et al. Among authors: medvedev p. J Comput Biol. 2018 May;25(5):467-479. doi: 10.1089/cmb.2017.0258. Epub 2018 Apr 5. J Comput Biol. 2018. PMID: 29620920
119 results