Berman BP - Search Results

1

Functional enhancers at the gene-poor 8q24 cancer-linked locus.

Jia L, Landan G, Pomerantz M, Jaschek R, Herman P, Reich D, Yan C, Khalid O, Kantoff P, Oh W, Manak JR, Berman BP, Henderson BE, Frenkel B, Haiman CA, Freedman M, Tanay A, Coetzee GA. Jia L, et al. Among authors: berman bp. PLoS Genet. 2009 Aug;5(8):e1000597. doi: 10.1371/journal.pgen.1000597. Epub 2009 Aug 14. PLoS Genet. 2009. PMID: 19680443 Free PMC article.

2

Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity.

Jia L, Berman BP, Jariwala U, Yan X, Cogan JP, Walters A, Chen T, Buchanan G, Frenkel B, Coetzee GA. Jia L, et al. Among authors: berman bp. PLoS One. 2008;3(11):e3645. doi: 10.1371/journal.pone.0003645. Epub 2008 Nov 10. PLoS One. 2008. PMID: 18997859 Free PMC article.

3

Location, location, (ChIP-)location! Mapping chromatin landscapes one immunoprecipitation at a time.

Berman BP, Frenkel B, Coetzee GA. Berman BP, et al. J Cell Biochem. 2009 May 1;107(1):1-5. doi: 10.1002/jcb.22133. J Cell Biochem. 2009. PMID: 19308935 Free PMC article.

4

Androgen receptor responsive enhancers are flanked by consistently-positioned H3-acetylated nucleosomes.

Berman BP, Frenkel B, Coetzee GA, Jia L. Berman BP, et al. Cell Cycle. 2010 Jun 1;9(11):2249-50. doi: 10.4161/cc.9.11.11621. Epub 2010 Jun 1. Cell Cycle. 2010. PMID: 20495358 Free PMC article. No abstract available.

5

H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes.

Kelly TK, Miranda TB, Liang G, Berman BP, Lin JC, Tanay A, Jones PA. Kelly TK, et al. Among authors: berman bp. Mol Cell. 2010 Sep 24;39(6):901-11. doi: 10.1016/j.molcel.2010.08.026. Mol Cell. 2010. PMID: 20864037 Free PMC article.

6

Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells.

Andreu-Vieyra C, Lai J, Berman BP, Frenkel B, Jia L, Jones PA, Coetzee GA. Andreu-Vieyra C, et al. Among authors: berman bp. Mol Cell Biol. 2011 Dec;31(23):4648-62. doi: 10.1128/MCB.05934-11. Epub 2011 Oct 3. Mol Cell Biol. 2011. PMID: 21969603 Free PMC article.

7

Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.

Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CP, van Dijk CM, Tollenaar RA, Van Den Berg D, Laird PW. Berman BP, et al. Nat Genet. 2011 Nov 27;44(1):40-6. doi: 10.1038/ng.969. Nat Genet. 2011. PMID: 22120008 Free PMC article.

8

Opposing effects of Runx2 and estradiol on breast cancer cell proliferation: in vitro identification of reciprocally regulated gene signature related to clinical letrozole responsiveness.

Chimge NO, Baniwal SK, Luo J, Coetzee S, Khalid O, Berman BP, Tripathy D, Ellis MJ, Frenkel B. Chimge NO, et al. Among authors: berman bp. Clin Cancer Res. 2012 Feb 1;18(3):901-11. doi: 10.1158/1078-0432.CCR-11-1530. Epub 2011 Dec 6. Clin Cancer Res. 2012. PMID: 22147940 Free PMC article.

9

Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion.

Little GH, Noushmehr H, Baniwal SK, Berman BP, Coetzee GA, Frenkel B. Little GH, et al. Among authors: berman bp. Nucleic Acids Res. 2012 Apr;40(8):3538-47. doi: 10.1093/nar/gkr1219. Epub 2011 Dec 19. Nucleic Acids Res. 2012. PMID: 22187159 Free PMC article.

10

FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.

Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H. Coetzee SG, et al. Among authors: berman bp. Nucleic Acids Res. 2012 Oct;40(18):e139. doi: 10.1093/nar/gks542. Epub 2012 Jun 8. Nucleic Acids Res. 2012. PMID: 22684628 Free PMC article.

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