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Functional enhancers at the gene-poor 8q24 cancer-linked locus.
Jia L, Landan G, Pomerantz M, Jaschek R, Herman P, Reich D, Yan C, Khalid O, Kantoff P, Oh W, Manak JR, Berman BP, Henderson BE, Frenkel B, Haiman CA, Freedman M, Tanay A, Coetzee GA. Jia L, et al. Among authors: manak jr. PLoS Genet. 2009 Aug;5(8):e1000597. doi: 10.1371/journal.pgen.1000597. Epub 2009 Aug 14. PLoS Genet. 2009. PMID: 19680443 Free PMC article.
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer.
Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H, Beckwith CA, Chan JA, Hills A, Davis M, Yao K, Kehoe SM, Lenz HJ, Haiman CA, Yan C, Henderson BE, Frenkel B, Barretina J, Bass A, Tabernero J, Baselga J, Regan MM, Manak JR, Shivdasani R, Coetzee GA, Freedman ML. Pomerantz MM, et al. Among authors: manak jr. Nat Genet. 2009 Aug;41(8):882-4. doi: 10.1038/ng.403. Epub 2009 Jun 28. Nat Genet. 2009. PMID: 19561607 Free PMC article.
Spatial regulation of microRNA gene expression in the Drosophila embryo.
Biemar F, Zinzen R, Ronshaugen M, Sementchenko V, Manak JR, Levine MS. Biemar F, et al. Among authors: manak jr. Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):15907-11. doi: 10.1073/pnas.0507817102. Epub 2005 Oct 25. Proc Natl Acad Sci U S A. 2005. PMID: 16249329 Free PMC article.
Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes.
Willingham AT, Dike S, Cheng J, Manak JR, Bell I, Cheung E, Drenkow J, Dumais E, Duttagupta R, Ganesh M, Ghosh S, Helt G, Nix D, Piccolboni A, Sementchenko V, Tammana H, Kapranov P; ENCODE Genes And Transcripts Group; Gingeras TR. Willingham AT, et al. Among authors: manak jr. Cold Spring Harb Symp Quant Biol. 2006;71:101-10. doi: 10.1101/sqb.2006.71.068. Cold Spring Harb Symp Quant Biol. 2006. PMID: 17480199
Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster.
Hong X, Doddapaneni H, Comeron JM, Rodesch MJ, Halvensleben HA, Nien CY, Bolei F, Metpally R, Richmond TA, Albert TJ, Manak JR. Hong X, et al. Among authors: manak jr. G3 (Bethesda). 2012 Aug;2(8):873-82. doi: 10.1534/g3.112.003194. Epub 2012 Aug 1. G3 (Bethesda). 2012. PMID: 22908036 Free PMC article.
67 results