Biesinger J - Search Results

1

A risk variant in an miR-125b binding site in BMPR1B is associated with breast cancer pathogenesis.

Saetrom P, Biesinger J, Li SM, Smith D, Thomas LF, Majzoub K, Rivas GE, Alluin J, Rossi JJ, Krontiris TG, Weitzel J, Daly MB, Benson AB, Kirkwood JM, O'Dwyer PJ, Sutphen R, Stewart JA, Johnson D, Larson GP. Saetrom P, et al. Among authors: biesinger j. Cancer Res. 2009 Sep 15;69(18):7459-65. doi: 10.1158/0008-5472.CAN-09-1201. Epub 2009 Sep 8. Cancer Res. 2009. PMID: 19738052 Free PMC article.

2

Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR.

Chong HK, Biesinger J, Seo YK, Xie X, Osborne TF. Chong HK, et al. Among authors: biesinger j. BMC Genomics. 2012 Feb 1;13:51. doi: 10.1186/1471-2164-13-51. BMC Genomics. 2012. PMID: 22296850 Free PMC article.

3

Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy.

Seo YK, Jeon TI, Chong HK, Biesinger J, Xie X, Osborne TF. Seo YK, et al. Among authors: biesinger j. Cell Metab. 2011 Apr 6;13(4):367-375. doi: 10.1016/j.cmet.2011.03.005. Cell Metab. 2011. PMID: 21459322 Free PMC article.

4

AREM: aligning short reads from ChIP-sequencing by expectation maximization.

Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X. Newkirk D, et al. Among authors: biesinger j. J Comput Biol. 2011 Nov;18(11):1495-505. doi: 10.1089/cmb.2011.0185. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035330 Free PMC article.

5

Discovering and mapping chromatin states using a tree hidden Markov model.

Biesinger J, Wang Y, Xie X. Biesinger J, et al. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S4. doi: 10.1186/1471-2105-14-S5-S4. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23734743 Free PMC article.

6

The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome.

Newkirk DA, Chen YY, Chien R, Zeng W, Biesinger J, Flowers E, Kawauchi S, Santos R, Calof AL, Lander AD, Xie X, Yokomori K. Newkirk DA, et al. Among authors: biesinger j. Clin Epigenetics. 2017 Aug 25;9:89. doi: 10.1186/s13148-017-0391-x. eCollection 2017. Clin Epigenetics. 2017. PMID: 28855971 Free PMC article.

7

Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer.

Watanabe K, Biesinger J, Salmans ML, Roberts BS, Arthur WT, Cleary M, Andersen B, Xie X, Dai X. Watanabe K, et al. Among authors: biesinger j. PLoS One. 2014 Mar 20;9(3):e92317. doi: 10.1371/journal.pone.0092317. eCollection 2014. PLoS One. 2014. PMID: 24651522 Free PMC article.

8

Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program.

Chiu WT, Charney Le R, Blitz IL, Fish MB, Li Y, Biesinger J, Xie X, Cho KW. Chiu WT, et al. Among authors: biesinger j. Development. 2014 Dec;141(23):4537-47. doi: 10.1242/dev.107227. Epub 2014 Oct 30. Development. 2014. PMID: 25359723 Free PMC article.

9

Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.

Blitz IL, Biesinger J, Xie X, Cho KW. Blitz IL, et al. Among authors: biesinger j. Genesis. 2013 Dec;51(12):827-34. doi: 10.1002/dvg.22719. Epub 2013 Nov 21. Genesis. 2013. PMID: 24123579 Free PMC article.

10

Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation.

Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. Yao C, et al. Among authors: biesinger j. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18773-8. doi: 10.1073/pnas.1211101109. Epub 2012 Oct 29. Proc Natl Acad Sci U S A. 2012. PMID: 23112178 Free PMC article.

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