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The completion of the Mammalian Gene Collection (MGC).
MGC Project Team; Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, Robinson C, Mandich A, Derge JG, Lewis J, Shoaf D, Collins FS, Jang W, Wagner L, Shenmen CM, Misquitta L, Schaefer CF, Buetow KH, Bonner TI, Yankie L, Ward M, Phan L, Astashyn A, Brown G, Farrell C, Hart J, Landrum M, Maidak BL, Murphy M, Murphy T, Rajput B, Riddick L, Webb D, Weber J, Wu W, Pruitt KD, Maglott D, Siepel A, Brejova B, Diekhans M, Harte R, Baertsch R, Kent J, Haussler D, Brent M, Langton L, Comstock CL, Stevens M, Wei C, van Baren MJ, Salehi-Ashtiani K, Murray RR, Ghamsari L, Mello E, Lin C, Pennacchio C, Schreiber K, Shapiro N, Marsh A, Pardes E, Moore T, Lebeau A, Muratet M, Simmons B, Kloske D, Sieja S, Hudson J, Sethupathy P, Brownstein M, Bhat N, Lazar J, Jacob H, Gruber CE, Smith MR, McPherson J, Garcia AM, Gunaratne PH, Wu J, Muzny D, Gibbs RA, Young AC, Bouffard GG, Blakesley RW, Mullikin J, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Hirst M, Zeng T, Tse K, Moksa M, Deng M, Ma K, Mah D, Pang J, Taylor G, Chuah E, Deng A, Fichter K, Go A, Lee S, Wang J, Griffith M, Morin R, Moore RA, Mayo M, Munro S, Wagner S, Jones SJ, Holt RA, Marra MA, Lu S, Yang S, Ha… See abstract for full author list ➔ MGC Project Team, et al. Among authors: yankie l. Genome Res. 2009 Dec;19(12):2324-33. doi: 10.1101/gr.095976.109. Epub 2009 Sep 18. Genome Res. 2009. PMID: 19767417 Free PMC article.
GenBank 2023 update.
Sayers EW, Cavanaugh M, Clark K, Pruitt KD, Sherry ST, Yankie L, Karsch-Mizrachi I. Sayers EW, et al. Among authors: yankie l. Nucleic Acids Res. 2023 Jan 6;51(D1):D141-D144. doi: 10.1093/nar/gkac1012. Nucleic Acids Res. 2023. PMID: 36350640 Free PMC article.
GenBank 2024 Update.
Sayers EW, Cavanaugh M, Clark K, Pruitt KD, Sherry ST, Yankie L, Karsch-Mizrachi I. Sayers EW, et al. Among authors: yankie l. Nucleic Acids Res. 2024 Jan 5;52(D1):D134-D137. doi: 10.1093/nar/gkad903. Nucleic Acids Res. 2024. PMID: 37889039 Free PMC article.
Influenza sequence validation and annotation using VADR.
Calhoun VC, Hatcher EL, Yankie L, Nawrocki EP. Calhoun VC, et al. Among authors: yankie l. bioRxiv [Preprint]. 2024 Mar 25:2024.03.21.585980. doi: 10.1101/2024.03.21.585980. bioRxiv. 2024. PMID: 38712272 Free PMC article. Preprint.
Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank.
Underwood BA, Yankie L, Nawrocki EP, Palanigobu V, Gotvyanskyy S, Calhoun VC, Kornbluh M, Smith TG, Fleischmann L, Sinyakov D, Bollin CJ, Karsch-Mizrachi I. Underwood BA, et al. Among authors: yankie l. Database (Oxford). 2022 Mar 1;2022:baac006. doi: 10.1093/database/baac006. Database (Oxford). 2022. PMID: 35230423 Free PMC article.
VADR: validation and annotation of virus sequence submissions to GenBank.
Schäffer AA, Hatcher EL, Yankie L, Shonkwiler L, Brister JR, Karsch-Mizrachi I, Nawrocki EP. Schäffer AA, et al. Among authors: yankie l. BMC Bioinformatics. 2020 May 24;21(1):211. doi: 10.1186/s12859-020-3537-3. BMC Bioinformatics. 2020. PMID: 32448124 Free PMC article.
Location of the catalytic site for phosphoenolpyruvate formation within the primary structure of Clostridium symbiosum pyruvate phosphate dikinase. 1. Identification of an essential cysteine by chemical modification with [1-14C]bromopyruvate and site-directed mutagenesis.
Xu Y, Yankie L, Shen L, Jung YS, Mariano PS, Dunaway-Mariano D, Martin BM. Xu Y, et al. Among authors: yankie l. Biochemistry. 1995 Feb 21;34(7):2181-7. doi: 10.1021/bi00007a011. Biochemistry. 1995. PMID: 7857929