Royce T - Search Results

1

A comprehensive catalogue of somatic mutations from a human cancer genome.

Pleasance ED, Cheetham RK, Stephens PJ, McBride DJ, Humphray SJ, Greenman CD, Varela I, Lin ML, Ordóñez GR, Bignell GR, Ye K, Alipaz J, Bauer MJ, Beare D, Butler A, Carter RJ, Chen L, Cox AJ, Edkins S, Kokko-Gonzales PI, Gormley NA, Grocock RJ, Haudenschild CD, Hims MM, James T, Jia M, Kingsbury Z, Leroy C, Marshall J, Menzies A, Mudie LJ, Ning Z, Royce T, Schulz-Trieglaff OB, Spiridou A, Stebbings LA, Szajkowski L, Teague J, Williamson D, Chin L, Ross MT, Campbell PJ, Bentley DR, Futreal PA, Stratton MR. Pleasance ED, et al. Among authors: royce t. Nature. 2010 Jan 14;463(7278):191-6. doi: 10.1038/nature08658. Epub 2009 Dec 16. Nature. 2010. PMID: 20016485 Free PMC article.

2

CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data.

Ivakhno S, Royce T, Cox AJ, Evers DJ, Cheetham RK, Tavaré S. Ivakhno S, et al. Among authors: royce t. Bioinformatics. 2010 Dec 15;26(24):3051-8. doi: 10.1093/bioinformatics/btq587. Epub 2010 Oct 21. Bioinformatics. 2010. PMID: 20966003

3

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.

Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ. Amini S, et al. Among authors: royce t. Nat Genet. 2014 Dec;46(12):1343-9. doi: 10.1038/ng.3119. Epub 2014 Oct 19. Nat Genet. 2014. PMID: 25326703 Free PMC article.

4

Canvas: versatile and scalable detection of copy number variants.

Roller E, Ivakhno S, Lee S, Royce T, Tanner S. Roller E, et al. Among authors: royce t. Bioinformatics. 2016 Aug 1;32(15):2375-7. doi: 10.1093/bioinformatics/btw163. Epub 2016 Mar 24. Bioinformatics. 2016. PMID: 27153601

5

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB. Royce TE, et al. Bioinformatics. 2007 Apr 15;23(8):988-97. doi: 10.1093/bioinformatics/btm052. Epub 2007 Mar 25. Bioinformatics. 2007. PMID: 17387113

6

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M. Du J, et al. Bioinformatics. 2006 Dec 15;22(24):3016-24. doi: 10.1093/bioinformatics/btl515. Epub 2006 Oct 12. Bioinformatics. 2006. PMID: 17038339

7

Sequences of 95 human MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II.

Norman PJ, Norberg SJ, Guethlein LA, Nemat-Gorgani N, Royce T, Wroblewski EE, Dunn T, Mann T, Alicata C, Hollenbach JA, Chang W, Shults Won M, Gunderson KL, Abi-Rached L, Ronaghi M, Parham P. Norman PJ, et al. Among authors: royce t. Genome Res. 2017 May;27(5):813-823. doi: 10.1101/gr.213538.116. Epub 2017 Mar 30. Genome Res. 2017. PMID: 28360230 Free PMC article.

8

Very long haplotype tracts characterized at high resolution from HLA homozygous cell lines.

Norman PJ, Norberg SJ, Nemat-Gorgani N, Royce T, Hollenbach JA, Shults Won M, Guethlein LA, Gunderson KL, Ronaghi M, Parham P. Norman PJ, et al. Among authors: royce t. Immunogenetics. 2015 Sep;67(9):479-85. doi: 10.1007/s00251-015-0857-y. Epub 2015 Jul 22. Immunogenetics. 2015. PMID: 26198775 Free PMC article.

9

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB. April C, et al. Among authors: royce t. PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162. PLoS One. 2009. PMID: 19997620 Free PMC article.

10

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

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