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ABACAS: algorithm-based automatic contiguation of assembled sequences.
Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. Assefa S, et al. Among authors: berriman m. Bioinformatics. 2009 Aug 1;25(15):1968-9. doi: 10.1093/bioinformatics/btp347. Epub 2009 Jun 3. Bioinformatics. 2009. PMID: 19497936 Free PMC article.
Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans.
Jackson AP, Gamble JA, Yeomans T, Moran GP, Saunders D, Harris D, Aslett M, Barrell JF, Butler G, Citiulo F, Coleman DC, de Groot PW, Goodwin TJ, Quail MA, McQuillan J, Munro CA, Pain A, Poulter RT, Rajandream MA, Renauld H, Spiering MJ, Tivey A, Gow NA, Barrell B, Sullivan DJ, Berriman M. Jackson AP, et al. Among authors: berriman m. Genome Res. 2009 Dec;19(12):2231-44. doi: 10.1101/gr.097501.109. Epub 2009 Sep 10. Genome Res. 2009. PMID: 19745113 Free PMC article.
New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Böhme U, Lemieux J, Barrell B, Pain A, Berriman M, Newbold C, Llinás M. Otto TD, et al. Among authors: berriman m. Mol Microbiol. 2010 Apr;76(1):12-24. doi: 10.1111/j.1365-2958.2009.07026.x. Epub 2010 Feb 4. Mol Microbiol. 2010. PMID: 20141604 Free PMC article.
Long- and short-term selective forces on malaria parasite genomes.
Nygaard S, Braunstein A, Malsen G, Van Dongen S, Gardner PP, Krogh A, Otto TD, Pain A, Berriman M, McAuliffe J, Dermitzakis ET, Jeffares DC. Nygaard S, et al. Among authors: berriman m. PLoS Genet. 2010 Sep 9;6(9):e1001099. doi: 10.1371/journal.pgen.1001099. PLoS Genet. 2010. PMID: 20838588 Free PMC article.
RATT: Rapid Annotation Transfer Tool.
Otto TD, Dillon GP, Degrave WS, Berriman M. Otto TD, et al. Among authors: berriman m. Nucleic Acids Res. 2011 May;39(9):e57. doi: 10.1093/nar/gkq1268. Epub 2011 Feb 8. Nucleic Acids Res. 2011. PMID: 21306991 Free PMC article.
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus.
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJ, Otto TD, Hunt M, Reid AJ, Sanchez-Flores A, Tsuchihara K, Yokoi T, Larsson MC, Miwa J, Maule AG, Sahashi N, Jones JT, Berriman M. Kikuchi T, et al. Among authors: berriman m. PLoS Pathog. 2011 Sep;7(9):e1002219. doi: 10.1371/journal.ppat.1002219. Epub 2011 Sep 1. PLoS Pathog. 2011. PMID: 21909270 Free PMC article.
303 results