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A catalog of reference genomes from the human microbiome.
Human Microbiome Jumpstart Reference Strains Consortium; Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D. Human Microbiome Jumpstart Reference Strains Consortium, et al. Among authors: creasy hh. Science. 2010 May 21;328(5981):994-9. doi: 10.1126/science.1183605. Science. 2010. PMID: 20489017 Free PMC article.
The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.
Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG. Galens K, et al. Among authors: creasy hh. Stand Genomic Sci. 2011 Apr 29;4(2):244-51. doi: 10.4056/sigs.1223234. Epub 2011 Apr 25. Stand Genomic Sci. 2011. PMID: 21677861 Free PMC article.
A framework for human microbiome research.
Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.
Strains, functions and dynamics in the expanded Human Microbiome Project.
Lloyd-Price J, Mahurkar A, Rahnavard G, Crabtree J, Orvis J, Hall AB, Brady A, Creasy HH, McCracken C, Giglio MG, McDonald D, Franzosa EA, Knight R, White O, Huttenhower C. Lloyd-Price J, et al. Among authors: creasy hh. Nature. 2017 Oct 5;550(7674):61-66. doi: 10.1038/nature23889. Epub 2017 Sep 20. Nature. 2017. PMID: 28953883 Free PMC article.
Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project.
Lloyd-Price J, Mahurkar A, Rahnavard G, Crabtree J, Orvis J, Hall AB, Brady A, Creasy HH, McCracken C, Giglio MG, McDonald D, Franzosa EA, Knight R, White O, Huttenhower C. Lloyd-Price J, et al. Among authors: creasy hh. Nature. 2017 Nov 9;551(7679):256. doi: 10.1038/nature24485. Epub 2017 Oct 12. Nature. 2017. PMID: 29022944 Free PMC article.
The Integrative Human Microbiome Project.
Integrative HMP (iHMP) Research Network Consortium. Integrative HMP (iHMP) Research Network Consortium. Nature. 2019 May;569(7758):641-648. doi: 10.1038/s41586-019-1238-8. Epub 2019 May 29. Nature. 2019. PMID: 31142853 Free PMC article.
HMPDACC: a Human Microbiome Project Multi-omic data resource.
Creasy HH, Felix V, Aluvathingal J, Crabtree J, Ifeonu O, Matsumura J, McCracken C, Nickel L, Orvis J, Schor M, Giglio M, Mahurkar A, White O. Creasy HH, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D734-D742. doi: 10.1093/nar/gkaa996. Nucleic Acids Res. 2021. PMID: 33305317 Free PMC article.
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.
Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. Ament SA, et al. Among authors: creasy hh. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. Nucleic Acids Res. 2023. PMID: 36318260 Free PMC article.
Genome sequences of the zoonotic pathogens Chlamydia psittaci 6BC and Cal10.
Grinblat-Huse V, Drabek EF, Creasy HH, Daugherty SC, Jones KM, Santana-Cruz I, Tallon LJ, Read TD, Hatch TP, Bavoil P, Myers GS. Grinblat-Huse V, et al. Among authors: creasy hh. J Bacteriol. 2011 Aug;193(15):4039-40. doi: 10.1128/JB.05277-11. Epub 2011 May 27. J Bacteriol. 2011. PMID: 21622741 Free PMC article.
22 results