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beadarray: R classes and methods for Illumina bead-based data.
Dunning MJ, Smith ML, Ritchie ME, Tavaré S. Dunning MJ, et al. Among authors: ritchie me. Bioinformatics. 2007 Aug 15;23(16):2183-4. doi: 10.1093/bioinformatics/btm311. Epub 2007 Jun 22. Bioinformatics. 2007. PMID: 17586828
Statistical issues in the analysis of Illumina data.
Dunning MJ, Barbosa-Morais NL, Lynch AG, Tavaré S, Ritchie ME. Dunning MJ, et al. Among authors: ritchie me. BMC Bioinformatics. 2008 Feb 6;9:85. doi: 10.1186/1471-2105-9-85. BMC Bioinformatics. 2008. PMID: 18254947 Free PMC article.
Integrative analysis of RUNX1 downstream pathways and target genes.
Michaud J, Simpson KM, Escher R, Buchet-Poyau K, Beissbarth T, Carmichael C, Ritchie ME, Schütz F, Cannon P, Liu M, Shen X, Ito Y, Raskind WH, Horwitz MS, Osato M, Turner DR, Speed TP, Kavallaris M, Smyth GK, Scott HS. Michaud J, et al. Among authors: ritchie me. BMC Genomics. 2008 Jul 31;9:363. doi: 10.1186/1471-2164-9-363. BMC Genomics. 2008. PMID: 18671852 Free PMC article.
Modifier effects between regulatory and protein-coding variation.
Dimas AS, Stranger BE, Beazley C, Finn RD, Ingle CE, Forrest MS, Ritchie ME, Deloukas P, Tavaré S, Dermitzakis ET. Dimas AS, et al. Among authors: ritchie me. PLoS Genet. 2008 Oct;4(10):e1000244. doi: 10.1371/journal.pgen.1000244. Epub 2008 Oct 31. PLoS Genet. 2008. PMID: 18974877 Free PMC article.
Illumina WG-6 BeadChip strips should be normalized separately.
Shi W, Banerjee A, Ritchie ME, Gerondakis S, Smyth GK. Shi W, et al. Among authors: ritchie me. BMC Bioinformatics. 2009 Nov 11;10:372. doi: 10.1186/1471-2105-10-372. BMC Bioinformatics. 2009. PMID: 19903361 Free PMC article.
175 results