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Text mining and its potential applications in systems biology.
Ananiadou S, Kell DB, Tsujii J. Ananiadou S, et al. Among authors: tsujii j. Trends Biotechnol. 2006 Dec;24(12):571-9. doi: 10.1016/j.tibtech.2006.10.002. Epub 2006 Oct 12. Trends Biotechnol. 2006. PMID: 17045684 Review.
Event extraction across multiple levels of biological organization.
Pyysalo S, Ohta T, Miwa M, Cho HC, Tsujii J, Ananiadou S. Pyysalo S, et al. Among authors: tsujii j. Bioinformatics. 2012 Sep 15;28(18):i575-i581. doi: 10.1093/bioinformatics/bts407. Bioinformatics. 2012. PMID: 22962484 Free PMC article.
Complex event extraction at PubMed scale.
Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T. Björne J, et al. Among authors: tsujii j. Bioinformatics. 2010 Jun 15;26(12):i382-90. doi: 10.1093/bioinformatics/btq180. Bioinformatics. 2010. PMID: 20529932 Free PMC article.
Named entity recognition for bacterial Type IV secretion systems.
Ananiadou S, Sullivan D, Black W, Levow GA, Gillespie JJ, Mao C, Pyysalo S, Kolluru B, Tsujii J, Sobral B. Ananiadou S, et al. Among authors: tsujii j. PLoS One. 2011 Mar 29;6(3):e14780. doi: 10.1371/journal.pone.0014780. PLoS One. 2011. PMID: 21468321 Free PMC article.
Automatic extraction of angiogenesis bioprocess from text.
Wang X, McKendrick I, Barrett I, Dix I, French T, Tsujii J, Ananiadou S. Wang X, et al. Among authors: tsujii j. Bioinformatics. 2011 Oct 1;27(19):2730-7. doi: 10.1093/bioinformatics/btr460. Epub 2011 Aug 5. Bioinformatics. 2011. PMID: 21821664 Free PMC article.
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J. Kano Y, et al. Among authors: tsujii j. BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481. BMC Bioinformatics. 2011. PMID: 22177292 Free PMC article.
64 results