Alexander DH - Search Results

1

Penalized regression for genome-wide association screening of sequence data.

Zhou H, Alexander DH, Sehl ME, Sinsheimer JS, Sobel EM, Lange K. Zhou H, et al. Among authors: alexander dh. Pac Symp Biocomput. 2011:106-17. doi: 10.1142/9789814335058_0012. Pac Symp Biocomput. 2011. PMID: 21121038 Free PMC article.

2

Fast model-based estimation of ancestry in unrelated individuals.

Alexander DH, Novembre J, Lange K. Alexander DH, et al. Genome Res. 2009 Sep;19(9):1655-64. doi: 10.1101/gr.094052.109. Epub 2009 Jul 31. Genome Res. 2009. PMID: 19648217 Free PMC article.

3

A quasi-Newton acceleration for high-dimensional optimization algorithms.

Zhou H, Alexander D, Lange K. Zhou H, et al. Stat Comput. 2011 Jan 4;21(2):261-273. doi: 10.1007/s11222-009-9166-3. Stat Comput. 2011. PMID: 21359052 Free PMC article.

4

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation.

Alexander DH, Lange K. Alexander DH, et al. BMC Bioinformatics. 2011 Jun 18;12:246. doi: 10.1186/1471-2105-12-246. BMC Bioinformatics. 2011. PMID: 21682921 Free PMC article.

5

Stability selection for genome-wide association.

Alexander DH, Lange K. Alexander DH, et al. Genet Epidemiol. 2011 Nov;35(7):722-8. doi: 10.1002/gepi.20623. Epub 2011 Aug 26. Genet Epidemiol. 2011. PMID: 22009793

6

Efficient analysis of large datasets and sex bias with ADMIXTURE.

Shringarpure SS, Bustamante CD, Lange K, Alexander DH. Shringarpure SS, et al. Among authors: alexander dh. BMC Bioinformatics. 2016 May 23;17:218. doi: 10.1186/s12859-016-1082-x. BMC Bioinformatics. 2016. PMID: 27216439 Free PMC article.

7

Unsupervised discovery of ancestry-informative markers and genetic admixture proportions in biobank-scale datasets.

Ko S, Chu BB, Peterson D, Okenwa C, Papp JC, Alexander DH, Sobel EM, Zhou H, Lange KL. Ko S, et al. Among authors: alexander dh. Am J Hum Genet. 2023 Feb 2;110(2):314-325. doi: 10.1016/j.ajhg.2022.12.008. Epub 2023 Jan 6. Am J Hum Genet. 2023. PMID: 36610401 Free PMC article.

8

A universal SNP and small-indel variant caller using deep neural networks.

Poplin R, Chang PC, Alexander D, Schwartz S, Colthurst T, Ku A, Newburger D, Dijamco J, Nguyen N, Afshar PT, Gross SS, Dorfman L, McLean CY, DePristo MA. Poplin R, et al. Nat Biotechnol. 2018 Nov;36(10):983-987. doi: 10.1038/nbt.4235. Epub 2018 Sep 24. Nat Biotechnol. 2018. PMID: 30247488

9

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. Chin CS, et al. Among authors: alexander dh. Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5. Nat Methods. 2013. PMID: 23644548

10

Blood pressure and TNF-α act synergistically to increase leucocyte CD11b adhesion molecule expression in the BELFAST study: implications for better blood pressure control in ageing.

Rea IM, McNerlan SE, Alexander DH, Armstrong ME. Rea IM, et al. Among authors: alexander dh. Age (Dordr). 2013 Feb;35(1):197-205. doi: 10.1007/s11357-011-9326-1. Epub 2011 Nov 16. Age (Dordr). 2013. PMID: 22086659 Free PMC article.

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