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Rigid substructure search.
Shirvanyants D, Alexandrova AN, Dokholyan NV. Shirvanyants D, et al. Bioinformatics. 2011 May 1;27(9):1327-9. doi: 10.1093/bioinformatics/btr129. Epub 2011 Apr 1. Bioinformatics. 2011. PMID: 21460026 Free PMC article.
Rational design of a ligand-controlled protein conformational switch.
Dagliyan O, Shirvanyants D, Karginov AV, Ding F, Fee L, Chandrasekaran SN, Freisinger CM, Smolen GA, Huttenlocher A, Hahn KM, Dokholyan NV. Dagliyan O, et al. Among authors: shirvanyants d. Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6800-4. doi: 10.1073/pnas.1218319110. Epub 2013 Apr 8. Proc Natl Acad Sci U S A. 2013. PMID: 23569285 Free PMC article.
Pore dynamics and conductance of RyR1 transmembrane domain.
Shirvanyants D, Ramachandran S, Mei Y, Xu L, Meissner G, Dokholyan NV. Shirvanyants D, et al. Biophys J. 2014 Jun 3;106(11):2375-84. doi: 10.1016/j.bpj.2014.04.023. Biophys J. 2014. PMID: 24896116 Free PMC article.
Structural complexity and functional diversity of plant NADPH oxidases.
Kaur G, Guruprasad K, Temple BRS, Shirvanyants DG, Dokholyan NV, Pati PK. Kaur G, et al. Among authors: shirvanyants dg. Amino Acids. 2018 Jan;50(1):79-94. doi: 10.1007/s00726-017-2491-5. Epub 2017 Oct 25. Amino Acids. 2018. PMID: 29071531 Free PMC article.
Computational approaches to understanding protein aggregation in neurodegeneration.
Redler RL, Shirvanyants D, Dagliyan O, Ding F, Kim DN, Kota P, Proctor EA, Ramachandran S, Tandon A, Dokholyan NV. Redler RL, et al. Among authors: shirvanyants d. J Mol Cell Biol. 2014 Apr;6(2):104-15. doi: 10.1093/jmcb/mju007. Epub 2014 Mar 11. J Mol Cell Biol. 2014. PMID: 24620031 Free PMC article. Review.
Hybrid dynamics simulation engine for metalloproteins.
Sparta M, Shirvanyants D, Ding F, Dokholyan NV, Alexandrova AN. Sparta M, et al. Among authors: shirvanyants d. Biophys J. 2012 Aug 22;103(4):767-76. doi: 10.1016/j.bpj.2012.06.024. Biophys J. 2012. PMID: 22947938 Free PMC article.
19 results