Gerstein MB - Search Results

1

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.

Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB. Lu ZJ, et al. Among authors: gerstein mb. Genome Res. 2011 Feb;21(2):276-85. doi: 10.1101/gr.110189.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177971 Free PMC article.

2

Large-scale analysis of the yeast genome by transposon tagging and gene disruption.

Ross-Macdonald P, Coelho PS, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung KH, Sheehan A, Symoniatis D, Umansky L, Heidtman M, Nelson FK, Iwasaki H, Hager K, Gerstein M, Miller P, Roeder GS, Snyder M. Ross-Macdonald P, et al. Nature. 1999 Nov 25;402(6760):413-8. doi: 10.1038/46558. Nature. 1999. PMID: 10586881

3

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels.

Lin J, Gerstein M. Lin J, et al. Genome Res. 2000 Jun;10(6):808-18. doi: 10.1101/gr.10.6.808. Genome Res. 2000. PMID: 10854412 Free PMC article.

4

Analysis of yeast protein kinases using protein chips.

Zhu H, Klemic JF, Chang S, Bertone P, Casamayor A, Klemic KG, Smith D, Gerstein M, Reed MA, Snyder M. Zhu H, et al. Nat Genet. 2000 Nov;26(3):283-9. doi: 10.1038/81576. Nat Genet. 2000. PMID: 11062466

5

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M. Bertone P, et al. Nucleic Acids Res. 2001 Jul 1;29(13):2884-98. doi: 10.1093/nar/29.13.2884. Nucleic Acids Res. 2001. PMID: 11433035 Free PMC article.

6

Interrelating different types of genomic data, from proteome to secretome: 'oming in on function.

Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M. Greenbaum D, et al. Genome Res. 2001 Sep;11(9):1463-8. doi: 10.1101/gr.207401. Genome Res. 2001. PMID: 11544189 Free article.

7

Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.

Hegyi H, Gerstein M. Hegyi H, et al. Genome Res. 2001 Oct;11(10):1632-40. doi: 10.1101/gr.183801. Genome Res. 2001. PMID: 11591640 Free PMC article.

8

An integrated approach for finding overlooked genes in yeast.

Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P, Miller P, Gerstein MB, Snyder M. Kumar A, et al. Among authors: gerstein mb. Nat Biotechnol. 2002 Jan;20(1):58-63. doi: 10.1038/nbt0102-58. Nat Biotechnol. 2002. PMID: 11753363

9

Relating whole-genome expression data with protein-protein interactions.

Jansen R, Greenbaum D, Gerstein M. Jansen R, et al. Genome Res. 2002 Jan;12(1):37-46. doi: 10.1101/gr.205602. Genome Res. 2002. PMID: 11779829 Free PMC article.

10

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M. Harrison PM, et al. Genome Res. 2002 Feb;12(2):272-80. doi: 10.1101/gr.207102. Genome Res. 2002. PMID: 11827946 Free PMC article.

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