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Identification of functional elements and regulatory circuits by Drosophila modENCODE.
modENCODE Consortium; Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M. modENCODE Consortium, et al. Among authors: henikoff jg, henikoff s. Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22. Science. 2010. PMID: 21177974 Free PMC article.
Amino acid substitution matrices from protein blocks.
Henikoff S, Henikoff JG. Henikoff S, et al. Among authors: henikoff jg. Proc Natl Acad Sci U S A. 1992 Nov 15;89(22):10915-9. doi: 10.1073/pnas.89.22.10915. Proc Natl Acad Sci U S A. 1992. PMID: 1438297 Free PMC article.
Position-based sequence weights.
Henikoff S, Henikoff JG. Henikoff S, et al. Among authors: henikoff jg. J Mol Biol. 1994 Nov 4;243(4):574-8. doi: 10.1016/0022-2836(94)90032-9. J Mol Biol. 1994. PMID: 7966282
Blocks database and its applications.
Henikoff JG, Henikoff S. Henikoff JG, et al. Among authors: henikoff s. Methods Enzymol. 1996;266:88-105. doi: 10.1016/s0076-6879(96)66008-x. Methods Enzymol. 1996. PMID: 8743679
60 results