Mar JC - Search Results

1

Therapeutic implications of GIPC1 silencing in cancer.

Chittenden TW, Pak J, Rubio R, Cheng H, Holton K, Prendergast N, Glinskii V, Cai Y, Culhane A, Bentink S, Schwede M, Mar JC, Howe EA, Aryee M, Sultana R, Lanahan AA, Taylor JM, Holmes C, Hahn WC, Zhao JJ, Iglehart JD, Quackenbush J. Chittenden TW, et al. Among authors: mar jc. PLoS One. 2010 Dec 30;5(12):e15581. doi: 10.1371/journal.pone.0015581. PLoS One. 2010. PMID: 21209904 Free PMC article.

2

Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples.

Mar JC, Rubio R, Quackenbush J. Mar JC, et al. Genome Biol. 2006;7(12):R119. doi: 10.1186/gb-2006-7-12-r119. Genome Biol. 2006. PMID: 17169148 Free PMC article.

3

Decomposition of gene expression state space trajectories.

Mar JC, Quackenbush J. Mar JC, et al. PLoS Comput Biol. 2009 Dec;5(12):e1000626. doi: 10.1371/journal.pcbi.1000626. Epub 2009 Dec 24. PLoS Comput Biol. 2009. PMID: 20041215 Free PMC article.

4

attract: A method for identifying core pathways that define cellular phenotypes.

Mar JC, Matigian NA, Quackenbush J, Wells CA. Mar JC, et al. PLoS One. 2011;6(10):e25445. doi: 10.1371/journal.pone.0025445. Epub 2011 Oct 14. PLoS One. 2011. PMID: 22022396 Free PMC article.

5

nEASE: a method for gene ontology subclassification of high-throughput gene expression data.

Chittenden TW, Howe EA, Taylor JM, Mar JC, Aryee MJ, Gómez H, Sultana R, Braisted J, Nair SJ, Quackenbush J, Holmes C. Chittenden TW, et al. Among authors: mar jc. Bioinformatics. 2012 Mar 1;28(5):726-8. doi: 10.1093/bioinformatics/bts011. Epub 2012 Jan 13. Bioinformatics. 2012. PMID: 22247278 Free PMC article.

6

Defining an informativeness metric for clustering gene expression data.

Mar JC, Wells CA, Quackenbush J. Mar JC, et al. Bioinformatics. 2011 Apr 15;27(8):1094-100. doi: 10.1093/bioinformatics/btr074. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330289 Free PMC article.

7

Variance of gene expression identifies altered network constraints in neurological disease.

Mar JC, Matigian NA, Mackay-Sim A, Mellick GD, Sue CM, Silburn PA, McGrath JJ, Quackenbush J, Wells CA. Mar JC, et al. PLoS Genet. 2011 Aug;7(8):e1002207. doi: 10.1371/journal.pgen.1002207. Epub 2011 Aug 11. PLoS Genet. 2011. PMID: 21852951 Free PMC article.

8

Epstein-Barr virus nuclear antigen 3C regulated genes in lymphoblastoid cell lines.

Zhao B, Mar JC, Maruo S, Lee S, Gewurz BE, Johannsen E, Holton K, Rubio R, Takada K, Quackenbush J, Kieff E. Zhao B, et al. Among authors: mar jc. Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):337-42. doi: 10.1073/pnas.1017419108. Epub 2010 Dec 20. Proc Natl Acad Sci U S A. 2011. PMID: 21173222 Free PMC article.

9

HPV16 E7 oncogene expression in normal human epithelial cells causes molecular changes indicative of an epithelial to mesenchymal transition.

Hellner K, Mar J, Fang F, Quackenbush J, Münger K. Hellner K, et al. Virology. 2009 Aug 15;391(1):57-63. doi: 10.1016/j.virol.2009.05.036. Epub 2009 Jun 23. Virology. 2009. PMID: 19552933 Free PMC article.

10

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y, Suzuki H, Hume D, Quackenbush J. Mar JC, et al. BMC Bioinformatics. 2009 Apr 19;10:110. doi: 10.1186/1471-2105-10-110. BMC Bioinformatics. 2009. PMID: 19374774 Free PMC article.

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