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ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses.
Iida K, Kawaguchi S, Kobayashi N, Yoshida Y, Ishii M, Harada E, Hanada K, Matsui A, Okamoto M, Ishida J, Tanaka M, Morosawa T, Seki M, Toyoda T. Iida K, et al. Among authors: kobayashi n. Plant Cell Physiol. 2011 Feb;52(2):254-64. doi: 10.1093/pcp/pcq202. Epub 2011 Jan 12. Plant Cell Physiol. 2011. PMID: 21227933 Free PMC article.
Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array.
Matsui A, Ishida J, Morosawa T, Mochizuki Y, Kaminuma E, Endo TA, Okamoto M, Nambara E, Nakajima M, Kawashima M, Satou M, Kim JM, Kobayashi N, Toyoda T, Shinozaki K, Seki M. Matsui A, et al. Among authors: kobayashi n. Plant Cell Physiol. 2008 Aug;49(8):1135-49. doi: 10.1093/pcp/pcn101. Epub 2008 Jul 13. Plant Cell Physiol. 2008. PMID: 18625610
PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants.
Makita Y, Kobayashi N, Mochizuki Y, Yoshida Y, Asano S, Heida N, Deshpande M, Bhatia R, Matsushima A, Ishii M, Kawaguchi S, Iida K, Hanada K, Kuromori T, Seki M, Shinozaki K, Toyoda T. Makita Y, et al. Among authors: kobayashi n. Plant Cell Physiol. 2009 Jul;50(7):1249-59. doi: 10.1093/pcp/pcp086. Epub 2009 Jun 15. Plant Cell Physiol. 2009. PMID: 19528193 Free PMC article.
Arabidopsis tiling array analysis to identify the stress-responsive genes.
Matsui A, Ishida J, Morosawa T, Okamoto M, Kim JM, Kurihara Y, Kawashima M, Tanaka M, To TK, Nakaminami K, Kaminuma E, Endo TA, Mochizuki Y, Kawaguchi S, Kobayashi N, Shinozaki K, Toyoda T, Seki M. Matsui A, et al. Among authors: kobayashi n. Methods Mol Biol. 2010;639:141-55. doi: 10.1007/978-1-60761-702-0_8. Methods Mol Biol. 2010. PMID: 20387044
Statistical search on the Semantic Web.
Kobayashi N, Toyoda T. Kobayashi N, et al. Bioinformatics. 2008 Apr 1;24(7):1002-10. doi: 10.1093/bioinformatics/btn054. Epub 2008 Feb 8. Bioinformatics. 2008. PMID: 18263641
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.
Matsushima A, Kobayashi N, Mochizuki Y, Ishii M, Kawaguchi S, Endo TA, Umetsu R, Makita Y, Toyoda T. Matsushima A, et al. Among authors: kobayashi n. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W57-62. doi: 10.1093/nar/gkp404. Epub 2009 Jun 15. Nucleic Acids Res. 2009. PMID: 19528066 Free PMC article.
OmicBrowse: a browser of multidimensional omics annotations.
Toyoda T, Mochizuki Y, Player K, Heida N, Kobayashi N, Sakaki Y. Toyoda T, et al. Among authors: kobayashi n. Bioinformatics. 2007 Feb 15;23(4):524-6. doi: 10.1093/bioinformatics/btl523. Epub 2006 Oct 31. Bioinformatics. 2007. PMID: 17077097
5,043 results