Hautaniemi S - Search Results

1

CNAmet: an R package for integrating copy number, methylation and expression data.

Louhimo R, Hautaniemi S. Louhimo R, et al. Among authors: hautaniemi s. Bioinformatics. 2011 Mar 15;27(6):887-8. doi: 10.1093/bioinformatics/btr019. Epub 2011 Jan 12. Bioinformatics. 2011. PMID: 21228048

2

A novel strategy for microarray quality control using Bayesian networks.

Hautaniemi S, Edgren H, Vesanen P, Wolf M, Järvinen AK, Yli-Harja O, Astola J, Kallioniemi O, Monni O. Hautaniemi S, et al. Bioinformatics. 2003 Nov 1;19(16):2031-8. doi: 10.1093/bioinformatics/btg275. Bioinformatics. 2003. PMID: 14594707

3

Computational identification of candidate loci for recessively inherited mutation using high-throughput SNP arrays.

Laakso M, Tuupanen S, Karhu A, Lehtonen R, Aaltonen LA, Hautaniemi S. Laakso M, et al. Among authors: hautaniemi s. Bioinformatics. 2007 Aug 1;23(15):1952-61. doi: 10.1093/bioinformatics/btm263. Epub 2007 May 17. Bioinformatics. 2007. PMID: 17510170

4

Advanced analysis and visualization of gene copy number and expression data.

Autio R, Saarela M, Järvinen AK, Hautaniemi S, Astola J. Autio R, et al. Among authors: hautaniemi s. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S70. doi: 10.1186/1471-2105-10-S1-S70. BMC Bioinformatics. 2009. PMID: 19208175 Free PMC article.

5

Integrative platform to translate gene sets to networks.

Laakso M, Hautaniemi S. Laakso M, et al. Among authors: hautaniemi s. Bioinformatics. 2010 Jul 15;26(14):1802-3. doi: 10.1093/bioinformatics/btq277. Epub 2010 May 27. Bioinformatics. 2010. PMID: 20507894

6

Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme.

Ovaska K, Laakso M, Haapa-Paananen S, Louhimo R, Chen P, Aittomäki V, Valo E, Núñez-Fontarnau J, Rantanen V, Karinen S, Nousiainen K, Lahesmaa-Korpinen AM, Miettinen M, Saarinen L, Kohonen P, Wu J, Westermarck J, Hautaniemi S. Ovaska K, et al. Among authors: hautaniemi s. Genome Med. 2010 Sep 7;2(9):65. doi: 10.1186/gm186. Genome Med. 2010. PMID: 20822536 Free PMC article.

7

Data integration workflow for search of disease driving genes and genetic variants.

Karinen S, Heikkinen T, Nevanlinna H, Hautaniemi S. Karinen S, et al. Among authors: hautaniemi s. PLoS One. 2011 Apr 12;6(4):e18636. doi: 10.1371/journal.pone.0018636. PLoS One. 2011. PMID: 21533266 Free PMC article.

8

Comparative analysis of algorithms for integration of copy number and expression data.

Louhimo R, Lepikhova T, Monni O, Hautaniemi S. Louhimo R, et al. Among authors: hautaniemi s. Nat Methods. 2012 Feb 12;9(4):351-5. doi: 10.1038/nmeth.1893. Nat Methods. 2012. PMID: 22327835

9

Genomic region operation kit for flexible processing of deep sequencing data.

Ovaska K, Lyly L, Sahu B, Jänne OA, Hautaniemi S. Ovaska K, et al. Among authors: hautaniemi s. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):200-6. doi: 10.1109/TCBB.2012.170. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 23702556

10

Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors.

Aure MR, Leivonen SK, Fleischer T, Zhu Q, Overgaard J, Alsner J, Tramm T, Louhimo R, Alnæs GI, Perälä M, Busato F, Touleimat N, Tost J, Børresen-Dale AL, Hautaniemi S, Troyanskaya OG, Lingjærde OC, Sahlberg KK, Kristensen VN. Aure MR, et al. Among authors: hautaniemi s. Genome Biol. 2013 Nov 20;14(11):R126. doi: 10.1186/gb-2013-14-11-r126. Genome Biol. 2013. PMID: 24257477 Free PMC article.

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