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Dalliance: interactive genome viewing on the web.
Bioinformatics. 2011 Mar 15;27(6):889-90. doi: 10.1093/bioinformatics/btr020. Epub 2011 Jan 19.
Bioinformatics. 2011.
PMID: 21252075
Free PMC article.
iMotifs: an integrated sequence motif visualization and analysis environment.
Piipari M, Down TA, Saini H, Enright A, Hubbard TJ.
Piipari M, et al.
Bioinformatics. 2010 Mar 15;26(6):843-4. doi: 10.1093/bioinformatics/btq026. Epub 2010 Jan 26.
Bioinformatics. 2010.
PMID: 20106815
Free PMC article.
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Metamotifs--a generative model for building families of nucleotide position weight matrices.
Piipari M, Down TA, Hubbard TJ.
Piipari M, et al.
BMC Bioinformatics. 2010 Jun 25;11:348. doi: 10.1186/1471-2105-11-348.
BMC Bioinformatics. 2010.
PMID: 20579334
Free PMC article.
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An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice.
Lewis MA, Quint E, Glazier AM, Fuchs H, De Angelis MH, Langford C, van Dongen S, Abreu-Goodger C, Piipari M, Redshaw N, Dalmay T, Moreno-Pelayo MA, Enright AJ, Steel KP.
Lewis MA, et al. Among authors: piipari m.
Nat Genet. 2009 May;41(5):614-8. doi: 10.1038/ng.369. Epub 2009 Apr 12.
Nat Genet. 2009.
PMID: 19363478
Free PMC article.
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The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression.
Murray MJ, Saini HK, van Dongen S, Palmer RD, Muralidhar B, Pett MR, Piipari M, Thornton CM, Nicholson JC, Enright AJ, Coleman N.
Murray MJ, et al. Among authors: piipari m.
Mol Cancer. 2010 Nov 8;9:290. doi: 10.1186/1476-4598-9-290.
Mol Cancer. 2010.
PMID: 21059207
Free PMC article.
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Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses.
Stegle O, Parts L, Piipari M, Winn J, Durbin R.
Stegle O, et al. Among authors: piipari m.
Nat Protoc. 2012 Feb 16;7(3):500-7. doi: 10.1038/nprot.2011.457.
Nat Protoc. 2012.
PMID: 22343431
Free PMC article.
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