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Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.
Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Pühler A, Borth N, Grillari J. Hackl M, et al. Among authors: honer zu siederdissen c. J Biotechnol. 2011 Apr 20;153(1-2):62-75. doi: 10.1016/j.jbiotec.2011.02.011. Epub 2011 Mar 30. J Biotechnol. 2011. PMID: 21392545 Free PMC article.
A folding algorithm for extended RNA secondary structures.
Höner zu Siederdissen C, Bernhart SH, Stadler PF, Hofacker IL. Höner zu Siederdissen C, et al. Bioinformatics. 2011 Jul 1;27(13):i129-36. doi: 10.1093/bioinformatics/btr220. Bioinformatics. 2011. PMID: 21685061 Free PMC article.
CMCompare webserver: comparing RNA families via covariance models.
Eggenhofer F, Hofacker IL, Höner Zu Siederdissen C. Eggenhofer F, et al. Among authors: honer zu siederdissen c. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W499-503. doi: 10.1093/nar/gkt329. Epub 2013 May 2. Nucleic Acids Res. 2013. PMID: 23640335 Free PMC article.
RNAlien - Unsupervised RNA family model construction.
Eggenhofer F, Hofacker IL, Höner Zu Siederdissen C. Eggenhofer F, et al. Among authors: honer zu siederdissen c. Nucleic Acids Res. 2016 Sep 30;44(17):8433-41. doi: 10.1093/nar/gkw558. Epub 2016 Jun 21. Nucleic Acids Res. 2016. PMID: 27330139 Free PMC article.
Discriminatory power of RNA family models.
Höner zu Siederdissen C, Hofacker IL. Höner zu Siederdissen C, et al. Bioinformatics. 2010 Sep 15;26(18):i453-9. doi: 10.1093/bioinformatics/btq370. Bioinformatics. 2010. PMID: 20823307 Free PMC article.
Computational design of RNAs with complex energy landscapes.
Höner zu Siederdissen C, Hammer S, Abfalter I, Hofacker IL, Flamm C, Stadler PF. Höner zu Siederdissen C, et al. Biopolymers. 2013 Dec;99(12):1124-36. doi: 10.1002/bip.22337. Biopolymers. 2013. PMID: 23818234
2D meets 4G: G-quadruplexes in RNA secondary structure prediction.
Lorenz R, Bernhart SH, Qin J, Höner zu Siederdissen C, Tanzer A, Amman F, Hofacker IL, Stadler PF. Lorenz R, et al. Among authors: honer zu siederdissen c. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):832-44. doi: 10.1109/TCBB.2013.7. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24334379
69 results