Bundschuh R - Search Results

1

Complete characterization of the edited transcriptome of the mitochondrion of Physarum polycephalum using deep sequencing of RNA.

Bundschuh R, Altmüller J, Becker C, Nürnberg P, Gott JM. Bundschuh R, et al. Nucleic Acids Res. 2011 Aug;39(14):6044-55. doi: 10.1093/nar/gkr180. Epub 2011 Apr 8. Nucleic Acids Res. 2011. PMID: 21478163 Free PMC article.

2

Computational prediction of RNA editing sites.

Bundschuh R. Bundschuh R. Bioinformatics. 2004 Nov 22;20(17):3214-20. doi: 10.1093/bioinformatics/bth387. Epub 2004 Jul 1. Bioinformatics. 2004. PMID: 15231535

3

A statistical analysis of RNA folding algorithms through thermodynamic parameter perturbation.

Layton DM, Bundschuh R. Layton DM, et al. Among authors: bundschuh r. Nucleic Acids Res. 2005 Jan 26;33(2):519-24. doi: 10.1093/nar/gkh983. Print 2005. Nucleic Acids Res. 2005. PMID: 15673712 Free PMC article.

4

Discovery of new genes and deletion editing in Physarum mitochondria enabled by a novel algorithm for finding edited mRNAs.

Gott JM, Parimi N, Bundschuh R. Gott JM, et al. Among authors: bundschuh r. Nucleic Acids Res. 2005 Sep 7;33(16):5063-72. doi: 10.1093/nar/gki820. Print 2005. Nucleic Acids Res. 2005. PMID: 16147990 Free PMC article.

5

Model for codon position bias in RNA editing.

Liu T, Bundschuh R. Liu T, et al. Among authors: bundschuh r. Phys Rev Lett. 2005 Aug 19;95(8):088101. doi: 10.1103/PhysRevLett.95.088101. Epub 2005 Aug 18. Phys Rev Lett. 2005. PMID: 16196905 Free article.

6

Computational approaches to insertional RNA editing.

Bundschuh R. Bundschuh R. Methods Enzymol. 2007;424:173-95. doi: 10.1016/S0076-6879(07)24008-X. Methods Enzymol. 2007. PMID: 17662841

7

Genome annotation in the presence of insertional RNA editing.

Beargie C, Liu T, Corriveau M, Lee HY, Gott J, Bundschuh R. Beargie C, et al. Among authors: bundschuh r. Bioinformatics. 2008 Nov 15;24(22):2571-8. doi: 10.1093/bioinformatics/btn487. Epub 2008 Sep 25. Bioinformatics. 2008. PMID: 18819938 Free PMC article.

8

A quantitative model of nucleosome dynamics.

Forties RA, North JA, Javaid S, Tabbaa OP, Fishel R, Poirier MG, Bundschuh R. Forties RA, et al. Among authors: bundschuh r. Nucleic Acids Res. 2011 Oct;39(19):8306-13. doi: 10.1093/nar/gkr422. Epub 2011 Jul 14. Nucleic Acids Res. 2011. PMID: 21764779 Free PMC article.

9

Comparison of insertional RNA editing in Myxomycetes.

Chen C, Frankhouser D, Bundschuh R. Chen C, et al. Among authors: bundschuh r. PLoS Comput Biol. 2012;8(2):e1002400. doi: 10.1371/journal.pcbi.1002400. Epub 2012 Feb 23. PLoS Comput Biol. 2012. PMID: 22383871 Free PMC article.

10

Regulation of the nucleosome unwrapping rate controls DNA accessibility.

North JA, Shimko JC, Javaid S, Mooney AM, Shoffner MA, Rose SD, Bundschuh R, Fishel R, Ottesen JJ, Poirier MG. North JA, et al. Among authors: bundschuh r. Nucleic Acids Res. 2012 Nov 1;40(20):10215-27. doi: 10.1093/nar/gks747. Epub 2012 Sep 10. Nucleic Acids Res. 2012. PMID: 22965129 Free PMC article.

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