Dufayard JF - Search Results

1

Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes.

Anisimova M, Gil M, Dufayard JF, Dessimoz C, Gascuel O. Anisimova M, et al. Among authors: dufayard jf. Syst Biol. 2011 Oct;60(5):685-99. doi: 10.1093/sysbio/syr041. Epub 2011 May 3. Syst Biol. 2011. PMID: 21540409 Free PMC article.

2

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. Guindon S, et al. Among authors: dufayard jf. Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29. Syst Biol. 2010. PMID: 20525638 Free article.

3

Estimating maximum likelihood phylogenies with PhyML.

Guindon S, Delsuc F, Dufayard JF, Gascuel O. Guindon S, et al. Among authors: dufayard jf. Methods Mol Biol. 2009;537:113-37. doi: 10.1007/978-1-59745-251-9_6. Methods Mol Biol. 2009. PMID: 19378142

4

Big data and other challenges in the quest for orthologs.

Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.

5

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O. Bréhélin L, et al. Among authors: dufayard jf. BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440. BMC Bioinformatics. 2008. PMID: 18925948 Free PMC article.

6

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G. Dufayard JF, et al. Bioinformatics. 2005 Jun 1;21(11):2596-603. doi: 10.1093/bioinformatics/bti325. Epub 2005 Feb 15. Bioinformatics. 2005. PMID: 15713731

7

Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G. Penel S, et al. Among authors: dufayard jf. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S3. doi: 10.1186/1471-2105-10-S6-S3. BMC Bioinformatics. 2009. PMID: 19534752 Free PMC article.

8

The banana genome hub.

Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF, Lengelle J, Baurens FC, Cenci A, Pitollat B, D'Hont A, Ruiz M, Rouard M, Bocs S. Droc G, et al. Among authors: dufayard jf. Database (Oxford). 2013 May 23;2013:bat035. doi: 10.1093/database/bat035. Print 2013. Database (Oxford). 2013. PMID: 23707967 Free PMC article.

9

Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis.

Piyatrakul P, Putranto RA, Martin F, Rio M, Dessailly F, Leclercq J, Dufayard JF, Lardet L, Montoro P. Piyatrakul P, et al. Among authors: dufayard jf. BMC Plant Biol. 2012 Dec 26;12:244. doi: 10.1186/1471-2229-12-244. BMC Plant Biol. 2012. PMID: 23268714 Free PMC article.

10

SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations.

Dereeper A, Homa F, Andres G, Sempere G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. Dereeper A, et al. Among authors: dufayard jf. Nucleic Acids Res. 2015 Jul 1;43(W1):W295-300. doi: 10.1093/nar/gkv351. Epub 2015 Jun 3. Nucleic Acids Res. 2015. PMID: 26040700 Free PMC article.

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