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Minimum Information About a Simulation Experiment (MIASE).
Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, Laibe C, Miller AK, Moraru I, Nickerson D, Nielsen P, Nikolski M, Sahle S, Sauro HM, Schmidt H, Snoep JL, Tolle D, Wolkenhauer O, Le Novère N. Waltemath D, et al. PLoS Comput Biol. 2011 Apr;7(4):e1001122. doi: 10.1371/journal.pcbi.1001122. Epub 2011 Apr 28. PLoS Comput Biol. 2011. PMID: 21552546 Free PMC article. No abstract available.
The JWS online simulation database.
Peters M, Eicher JJ, van Niekerk DD, Waltemath D, Snoep JL. Peters M, et al. Among authors: waltemath d. Bioinformatics. 2017 May 15;33(10):1589-1590. doi: 10.1093/bioinformatics/btw831. Bioinformatics. 2017. PMID: 28130238
Ranked retrieval of Computational Biology models.
Henkel R, Endler L, Peters A, Le Novère N, Waltemath D. Henkel R, et al. Among authors: waltemath d. BMC Bioinformatics. 2010 Aug 11;11:423. doi: 10.1186/1471-2105-11-423. BMC Bioinformatics. 2010. PMID: 20701772 Free PMC article.
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
Bergmann FT, Adams R, Moodie S, Cooper J, Glont M, Golebiewski M, Hucka M, Laibe C, Miller AK, Nickerson DP, Olivier BG, Rodriguez N, Sauro HM, Scharm M, Soiland-Reyes S, Waltemath D, Yvon F, Le Novère N. Bergmann FT, et al. Among authors: waltemath d. BMC Bioinformatics. 2014 Dec 14;15(1):369. doi: 10.1186/s12859-014-0369-z. BMC Bioinformatics. 2014. PMID: 25494900 Free PMC article.
73 results