Holmes C - Search Results

1

Bayesian Nonparametric Hidden Markov Models with application to the analysis of copy-number-variation in mammalian genomes.

Yau C, Papaspiliopoulos O, Roberts GO, Holmes C. Yau C, et al. Among authors: holmes c. J R Stat Soc Series B Stat Methodol. 2011 Jan 1;73(1):37-57. doi: 10.1111/j.1467-9868.2010.00756.x. J R Stat Soc Series B Stat Methodol. 2011. PMID: 21687778 Free PMC article.

2

Hierarchical Bayesian nonparametric mixture models for clustering with variable relevance determination.

Yau C, Holmes C. Yau C, et al. Among authors: holmes c. Bayesian Anal. 2011 Jul 1;6(2):329-352. doi: 10.1214/11-BA612. Bayesian Anal. 2011. PMID: 21709771 Free PMC article.

3

CNV discovery using SNP genotyping arrays.

Yau C, Holmes CC. Yau C, et al. Among authors: holmes cc. Cytogenet Genome Res. 2008;123(1-4):307-12. doi: 10.1159/000184722. Epub 2009 Mar 11. Cytogenet Genome Res. 2008. PMID: 19287169 Review.

4

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.

Colella S, Yau C, Taylor JM, Mirza G, Butler H, Clouston P, Bassett AS, Seller A, Holmes CC, Ragoussis J. Colella S, et al. Among authors: holmes cc. Nucleic Acids Res. 2007;35(6):2013-25. doi: 10.1093/nar/gkm076. Epub 2007 Mar 6. Nucleic Acids Res. 2007. PMID: 17341461 Free PMC article.

5

Statistical Inference in Hidden Markov Models Using k-Segment Constraints.

Titsias MK, Holmes CC, Yau C. Titsias MK, et al. Among authors: holmes cc. J Am Stat Assoc. 2016 Jan 2;111(513):200-215. doi: 10.1080/01621459.2014.998762. Epub 2016 May 5. J Am Stat Assoc. 2016. PMID: 27226674 Free PMC article.

6

A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data.

Yau C, Mouradov D, Jorissen RN, Colella S, Mirza G, Steers G, Harris A, Ragoussis J, Sieber O, Holmes CC. Yau C, et al. Among authors: holmes cc. Genome Biol. 2010;11(9):R92. doi: 10.1186/gb-2010-11-9-r92. Epub 2010 Sep 21. Genome Biol. 2010. PMID: 20858232 Free PMC article.

7

On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods.

Lee A, Yau C, Giles MB, Doucet A, Holmes CC. Lee A, et al. Among authors: holmes cc. J Comput Graph Stat. 2010 Dec 1;19(4):769-789. doi: 10.1198/jcgs.2010.10039. J Comput Graph Stat. 2010. PMID: 22003276 Free PMC article.

8

NucleoFinder: a statistical approach for the detection of nucleosome positions.

Becker J, Yau C, Hancock JM, Holmes CC. Becker J, et al. Among authors: holmes cc. Bioinformatics. 2013 Mar 15;29(6):711-6. doi: 10.1093/bioinformatics/bts719. Epub 2013 Jan 6. Bioinformatics. 2013. PMID: 23297036 Free PMC article.

9

Quantification of subclonal distributions of recurrent genomic aberrations in paired pre-treatment and relapse samples from patients with B-cell chronic lymphocytic leukemia.

Knight SJ, Yau C, Clifford R, Timbs AT, Sadighi Akha E, Dréau HM, Burns A, Ciria C, Oscier DG, Pettitt AR, Dutton S, Holmes CC, Taylor J, Cazier JB, Schuh A. Knight SJ, et al. Among authors: holmes cc. Leukemia. 2012 Jul;26(7):1564-75. doi: 10.1038/leu.2012.13. Epub 2012 Jan 19. Leukemia. 2012. PMID: 22258401 Free PMC article.

10

GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population.

Giannoulatou E, Yau C, Colella S, Ragoussis J, Holmes CC. Giannoulatou E, et al. Among authors: holmes cc. Bioinformatics. 2008 Oct 1;24(19):2209-14. doi: 10.1093/bioinformatics/btn386. Epub 2008 Jul 24. Bioinformatics. 2008. PMID: 18653518

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