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Mining metabolites: extracting the yeast metabolome from the literature.
Nobata C, Dobson PD, Iqbal SA, Mendes P, Tsujii J, Kell DB, Ananiadou S. Nobata C, et al. Among authors: mendes p. Metabolomics. 2011 Mar;7(1):94-101. doi: 10.1007/s11306-010-0251-6. Epub 2010 Oct 31. Metabolomics. 2011. PMID: 21687783 Free PMC article.
Recon 2.2: from reconstruction to model of human metabolism.
Swainston N, Smallbone K, Hefzi H, Dobson PD, Brewer J, Hanscho M, Zielinski DC, Ang KS, Gardiner NJ, Gutierrez JM, Kyriakopoulos S, Lakshmanan M, Li S, Liu JK, Martínez VS, Orellana CA, Quek LE, Thomas A, Zanghellini J, Borth N, Lee DY, Nielsen LK, Kell DB, Lewis NE, Mendes P. Swainston N, et al. Among authors: mendes p. Metabolomics. 2016;12:109. doi: 10.1007/s11306-016-1051-4. Epub 2016 Jun 7. Metabolomics. 2016. PMID: 27358602 Free PMC article.
Further developments towards a genome-scale metabolic model of yeast.
Dobson PD, Smallbone K, Jameson D, Simeonidis E, Lanthaler K, Pir P, Lu C, Swainston N, Dunn WB, Fisher P, Hull D, Brown M, Oshota O, Stanford NJ, Kell DB, King RD, Oliver SG, Stevens RD, Mendes P. Dobson PD, et al. Among authors: mendes p. BMC Syst Biol. 2010 Oct 28;4:145. doi: 10.1186/1752-0509-4-145. BMC Syst Biol. 2010. PMID: 21029416 Free PMC article.
biochem4j: Integrated and extensible biochemical knowledge through graph databases.
Swainston N, Batista-Navarro R, Carbonell P, Dobson PD, Dunstan M, Jervis AJ, Vinaixa M, Williams AR, Ananiadou S, Faulon JL, Mendes P, Kell DB, Scrutton NS, Breitling R. Swainston N, et al. Among authors: mendes p. PLoS One. 2017 Jul 14;12(7):e0179130. doi: 10.1371/journal.pone.0179130. eCollection 2017. PLoS One. 2017. PMID: 28708831 Free PMC article.
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.
Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasić I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttilä M, Klipp E, Palsson BØ, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB. Herrgård MJ, et al. Among authors: mendes p. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. Nat Biotechnol. 2008. PMID: 18846089 Free PMC article.
Response to 'The Need for Speed', by Matsson et al.
Mendes P, Oliver SG, Kell DB. Mendes P, et al. Trends Pharmacol Sci. 2016 Apr;37(4):245-246. doi: 10.1016/j.tips.2016.02.004. Epub 2016 Feb 26. Trends Pharmacol Sci. 2016. PMID: 26924017 Free article. No abstract available.
531 results