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Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage.
Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV. Yoosuf N, et al. Among authors: shabalina sa. Genome Biol Evol. 2012;4(12):1324-30. doi: 10.1093/gbe/evs109. Genome Biol Evol. 2012. PMID: 23221609 Free PMC article.
Widespread positive selection in synonymous sites of mammalian genes.
Resch AM, Carmel L, Mariño-Ramírez L, Ogurtsov AY, Shabalina SA, Rogozin IB, Koonin EV. Resch AM, et al. Among authors: shabalina sa. Mol Biol Evol. 2007 Aug;24(8):1821-31. doi: 10.1093/molbev/msm100. Epub 2007 May 23. Mol Biol Evol. 2007. PMID: 17522087 Free PMC article.
Origins and evolution of eukaryotic RNA interference.
Shabalina SA, Koonin EV. Shabalina SA, et al. Trends Ecol Evol. 2008 Oct;23(10):578-87. doi: 10.1016/j.tree.2008.06.005. Epub 2008 Aug 18. Trends Ecol Evol. 2008. PMID: 18715673 Free PMC article. Review.
The vast, conserved mammalian lincRNome.
Managadze D, Lobkovsky AE, Wolf YI, Shabalina SA, Rogozin IB, Koonin EV. Managadze D, et al. Among authors: shabalina sa. PLoS Comput Biol. 2013;9(2):e1002917. doi: 10.1371/journal.pcbi.1002917. Epub 2013 Feb 28. PLoS Comput Biol. 2013. PMID: 23468607 Free PMC article.
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