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PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H. Aranda B, et al. Among authors: eisenberg d. Nat Methods. 2011 Jun 29;8(7):528-9. doi: 10.1038/nmeth.1637. Nat Methods. 2011. PMID: 21716279 Free PMC article. No abstract available.
DIP: the database of interacting proteins.
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D. Xenarios I, et al. Among authors: eisenberg d. Nucleic Acids Res. 2000 Jan 1;28(1):289-91. doi: 10.1093/nar/28.1.289. Nucleic Acids Res. 2000. PMID: 10592249 Free PMC article.
DIP: The Database of Interacting Proteins: 2001 update.
Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D. Xenarios I, et al. Among authors: eisenberg d. Nucleic Acids Res. 2001 Jan 1;29(1):239-41. doi: 10.1093/nar/29.1.239. Nucleic Acids Res. 2001. PMID: 11125102 Free PMC article.
Motif-based fold assignment.
Salwinski L, Eisenberg D. Salwinski L, et al. Among authors: eisenberg d. Protein Sci. 2001 Dec;10(12):2460-9. doi: 10.1110/ps.14401. Protein Sci. 2001. PMID: 11714913 Free PMC article.
The Database of Interacting Proteins: 2004 update.
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. Salwinski L, et al. Among authors: eisenberg d. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D449-51. doi: 10.1093/nar/gkh086. Nucleic Acids Res. 2004. PMID: 14681454 Free PMC article.
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker K, Grant SG, Sander C, Bork P, Zhu W, Pandey A, Brazma A, Jacq B, Vidal M, Sherman D, Legrain P, Cesareni G, Xenarios I, Eisenberg D, Steipe B, Hogue C, Apweiler R. Hermjakob H, et al. Among authors: eisenberg d. Nat Biotechnol. 2004 Feb;22(2):177-83. doi: 10.1038/nbt926. Nat Biotechnol. 2004. PMID: 14755292
In silico simulation of biological network dynamics.
Salwinski L, Eisenberg D. Salwinski L, et al. Among authors: eisenberg d. Nat Biotechnol. 2004 Aug;22(8):1017-9. doi: 10.1038/nbt991. Epub 2004 Jul 4. Nat Biotechnol. 2004. PMID: 15235611
1,090 results