Caldas C - Search Results

1

A sparse regulatory network of copy-number driven gene expression reveals putative breast cancer oncogenes.

Yuan Y, Curtis C, Caldas C, Markowetz F. Yuan Y, et al. Among authors: caldas c. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):947-54. doi: 10.1109/TCBB.2011.105. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 21788678

2

A 1 Mb minimal amplicon at 8p11-12 in breast cancer identifies new candidate oncogenes.

Garcia MJ, Pole JC, Chin SF, Teschendorff A, Naderi A, Ozdag H, Vias M, Kranjac T, Subkhankulova T, Paish C, Ellis I, Brenton JD, Edwards PA, Caldas C. Garcia MJ, et al. Among authors: caldas c. Oncogene. 2005 Aug 4;24(33):5235-45. doi: 10.1038/sj.onc.1208741. Oncogene. 2005. PMID: 15897872

3

Elucidating the altered transcriptional programs in breast cancer using independent component analysis.

Teschendorff AE, Journée M, Absil PA, Sepulchre R, Caldas C. Teschendorff AE, et al. Among authors: caldas c. PLoS Comput Biol. 2007 Aug;3(8):e161. doi: 10.1371/journal.pcbi.0030161. Epub 2007 Jun 29. PLoS Comput Biol. 2007. PMID: 17708679 Free PMC article.

4

High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.

Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-Morais NL, Thorne NP, Costa JL, Pinder SE, van de Wiel MA, Green AR, Ellis IO, Porter PL, Tavaré S, Brenton JD, Ylstra B, Caldas C. Chin SF, et al. Among authors: caldas c. Genome Biol. 2007;8(10):R215. doi: 10.1186/gb-2007-8-10-r215. Genome Biol. 2007. PMID: 17925008 Free PMC article.

5

The pitfalls of platform comparison: DNA copy number array technologies assessed.

Curtis C, Lynch AG, Dunning MJ, Spiteri I, Marioni JC, Hadfield J, Chin SF, Brenton JD, Tavaré S, Caldas C. Curtis C, et al. Among authors: caldas c. BMC Genomics. 2009 Dec 8;10:588. doi: 10.1186/1471-2164-10-588. BMC Genomics. 2009. PMID: 19995423 Free PMC article.

6

Extent of differential allelic expression of candidate breast cancer genes is similar in blood and breast.

Maia AT, Spiteri I, Lee AJ, O'Reilly M, Jones L, Caldas C, Ponder BA. Maia AT, et al. Among authors: caldas c. Breast Cancer Res. 2009;11(6):R88. doi: 10.1186/bcr2458. Epub 2009 Dec 10. Breast Cancer Res. 2009. PMID: 20003265 Free PMC article.

7

Micro-RNAs and breast cancer.

Le Quesne J, Caldas C. Le Quesne J, et al. Among authors: caldas c. Mol Oncol. 2010 Jun;4(3):230-41. doi: 10.1016/j.molonc.2010.04.009. Epub 2010 Apr 28. Mol Oncol. 2010. PMID: 20537965 Free PMC article. Review.

8

Genomic architecture characterizes tumor progression paths and fate in breast cancer patients.

Russnes HG, Vollan HKM, Lingjærde OC, Krasnitz A, Lundin P, Naume B, Sørlie T, Borgen E, Rye IH, Langerød A, Chin SF, Teschendorff AE, Stephens PJ, Månér S, Schlichting E, Baumbusch LO, Kåresen R, Stratton MP, Wigler M, Caldas C, Zetterberg A, Hicks J, Børresen-Dale AL. Russnes HG, et al. Among authors: caldas c. Sci Transl Med. 2010 Jun 30;2(38):38ra47. doi: 10.1126/scitranslmed.3000611. Sci Transl Med. 2010. PMID: 20592421 Free PMC article.

9

The importance of platform annotation in interpreting microarray data.

Dunning MJ, Curtis C, Barbosa-Morais NL, Caldas C, Tavaré S, Lynch AG. Dunning MJ, et al. Among authors: caldas c. Lancet Oncol. 2010 Aug;11(8):717. doi: 10.1016/S1470-2045(10)70115-7. Lancet Oncol. 2010. PMID: 20688273 No abstract available.

10

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium.

Holland DG, Burleigh A, Git A, Goldgraben MA, Perez-Mancera PA, Chin SF, Hurtado A, Bruna A, Ali HR, Greenwood W, Dunning MJ, Samarajiwa S, Menon S, Rueda OM, Lynch AG, McKinney S, Ellis IO, Eaves CJ, Carroll JS, Curtis C, Aparicio S, Caldas C. Holland DG, et al. Among authors: caldas c. EMBO Mol Med. 2011 Mar;3(3):167-80. doi: 10.1002/emmm.201100122. Epub 2011 Feb 18. EMBO Mol Med. 2011. PMID: 21337521 Free PMC article.

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