Markowetz F - Search Results

1

A sparse regulatory network of copy-number driven gene expression reveals putative breast cancer oncogenes.

Yuan Y, Curtis C, Caldas C, Markowetz F. Yuan Y, et al. Among authors: markowetz f. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):947-54. doi: 10.1109/TCBB.2011.105. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 21788678

2

How to understand the cell by breaking it: network analysis of gene perturbation screens.

Markowetz F. Markowetz F. PLoS Comput Biol. 2010 Feb 26;6(2):e1000655. doi: 10.1371/journal.pcbi.1000655. PLoS Comput Biol. 2010. PMID: 20195495 Free PMC article. No abstract available.

3

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.

Wang X, Terfve C, Rose JC, Markowetz F. Wang X, et al. Among authors: markowetz f. Bioinformatics. 2011 Mar 15;27(6):879-80. doi: 10.1093/bioinformatics/btr028. Epub 2011 Jan 22. Bioinformatics. 2011. PMID: 21258062 Free PMC article.

4

Differential C3NET reveals disease networks of direct physical interactions.

Altay G, Asim M, Markowetz F, Neal DE. Altay G, et al. Among authors: markowetz f. BMC Bioinformatics. 2011 Jul 21;12:296. doi: 10.1186/1471-2105-12-296. BMC Bioinformatics. 2011. PMID: 21777411 Free PMC article.

5

Penalized regression elucidates aberration hotspots mediating subtype-specific transcriptional responses in breast cancer.

Yuan Y, Rueda OM, Curtis C, Markowetz F. Yuan Y, et al. Among authors: markowetz f. Bioinformatics. 2011 Oct 1;27(19):2679-85. doi: 10.1093/bioinformatics/btr450. Epub 2011 Jul 30. Bioinformatics. 2011. PMID: 21804112

6

Patient-specific data fusion defines prognostic cancer subtypes.

Yuan Y, Savage RS, Markowetz F. Yuan Y, et al. Among authors: markowetz f. PLoS Comput Biol. 2011 Oct;7(10):e1002227. doi: 10.1371/journal.pcbi.1002227. Epub 2011 Oct 20. PLoS Comput Biol. 2011. PMID: 22028636 Free PMC article.

7

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.

Curtis C, Shah SP, Chin SF, Turashvili G, Rueda OM, Dunning MJ, Speed D, Lynch AG, Samarajiwa S, Yuan Y, Gräf S, Ha G, Haffari G, Bashashati A, Russell R, McKinney S; METABRIC Group; Langerød A, Green A, Provenzano E, Wishart G, Pinder S, Watson P, Markowetz F, Murphy L, Ellis I, Purushotham A, Børresen-Dale AL, Brenton JD, Tavaré S, Caldas C, Aparicio S. Curtis C, et al. Among authors: markowetz f. Nature. 2012 Apr 18;486(7403):346-52. doi: 10.1038/nature10983. Nature. 2012. PMID: 22522925 Free PMC article.

8

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations.

Wang X, Castro MA, Mulder KW, Markowetz F. Wang X, et al. Among authors: markowetz f. PLoS Comput Biol. 2012;8(6):e1002566. doi: 10.1371/journal.pcbi.1002566. Epub 2012 Jun 28. PLoS Comput Biol. 2012. PMID: 22761558 Free PMC article.

9

Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling.

Yuan Y, Failmezger H, Rueda OM, Ali HR, Gräf S, Chin SF, Schwarz RF, Curtis C, Dunning MJ, Bardwell H, Johnson N, Doyle S, Turashvili G, Provenzano E, Aparicio S, Caldas C, Markowetz F. Yuan Y, et al. Among authors: markowetz f. Sci Transl Med. 2012 Oct 24;4(157):157ra143. doi: 10.1126/scitranslmed.3004330. Sci Transl Med. 2012. PMID: 23100629

10

Master regulators of FGFR2 signalling and breast cancer risk.

Fletcher MN, Castro MA, Wang X, de Santiago I, O'Reilly M, Chin SF, Rueda OM, Caldas C, Ponder BA, Markowetz F, Meyer KB. Fletcher MN, et al. Among authors: markowetz f. Nat Commun. 2013;4:2464. doi: 10.1038/ncomms3464. Nat Commun. 2013. PMID: 24043118 Free PMC article.

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