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Estimating the basic reproductive number from viral sequence data.
Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Joos B, Rieder P, Xie D, Günthard HF, Drummond AJ, Bonhoeffer S; Swiss HIV Cohort Study. Stadler T, et al. Among authors: boni j. Mol Biol Evol. 2012 Jan;29(1):347-57. doi: 10.1093/molbev/msr217. Epub 2011 Sep 2. Mol Biol Evol. 2012. PMID: 21890480
Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load.
Alizon S, von Wyl V, Stadler T, Kouyos RD, Yerly S, Hirschel B, Böni J, Shah C, Klimkait T, Furrer H, Rauch A, Vernazza PL, Bernasconi E, Battegay M, Bürgisser P, Telenti A, Günthard HF, Bonhoeffer S; Swiss HIV Cohort Study. Alizon S, et al. Among authors: boni j. PLoS Pathog. 2010 Sep 30;6(9):e1001123. doi: 10.1371/journal.ppat.1001123. PLoS Pathog. 2010. PMID: 20941398 Free PMC article.
Inferring epidemic contact structure from phylogenetic trees.
Leventhal GE, Kouyos R, Stadler T, Wyl Vv, Yerly S, Böni J, Cellerai C, Klimkait T, Günthard HF, Bonhoeffer S. Leventhal GE, et al. Among authors: boni j. PLoS Comput Biol. 2012;8(3):e1002413. doi: 10.1371/journal.pcbi.1002413. Epub 2012 Mar 8. PLoS Comput Biol. 2012. PMID: 22412361 Free PMC article.
Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity.
Bertels F, Marzel A, Leventhal G, Mitov V, Fellay J, Günthard HF, Böni J, Yerly S, Klimkait T, Aubert V, Battegay M, Rauch A, Cavassini M, Calmy A, Bernasconi E, Schmid P, Scherrer AU, Müller V, Bonhoeffer S, Kouyos R, Regoes RR; Swiss HIV Cohort Study. Bertels F, et al. Among authors: boni j. Mol Biol Evol. 2018 Jan 1;35(1):27-37. doi: 10.1093/molbev/msx246. Mol Biol Evol. 2018. PMID: 29029206 Free PMC article.
Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland.
Kouyos RD, von Wyl V, Yerly S, Böni J, Taffé P, Shah C, Bürgisser P, Klimkait T, Weber R, Hirschel B, Cavassini M, Furrer H, Battegay M, Vernazza PL, Bernasconi E, Rickenbach M, Ledergerber B, Bonhoeffer S, Günthard HF. Kouyos RD, et al. Among authors: boni j. J Infect Dis. 2010 May 15;201(10):1488-97. doi: 10.1086/651951. J Infect Dis. 2010. PMID: 20384495 Free article.
Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection.
Kouyos RD, von Wyl V, Yerly S, Böni J, Rieder P, Joos B, Taffé P, Shah C, Bürgisser P, Klimkait T, Weber R, Hirschel B, Cavassini M, Rauch A, Battegay M, Vernazza PL, Bernasconi E, Ledergerber B, Bonhoeffer S, Günthard HF; Swiss HIV Cohort Study. Kouyos RD, et al. Among authors: boni j. Clin Infect Dis. 2011 Feb 15;52(4):532-9. doi: 10.1093/cid/ciq164. Epub 2011 Jan 10. Clin Infect Dis. 2011. PMID: 21220770 Free PMC article.
The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland.
von Wyl V, Kouyos RD, Yerly S, Böni J, Shah C, Bürgisser P, Klimkait T, Weber R, Hirschel B, Cavassini M, Staehelin C, Battegay M, Vernazza PL, Bernasconi E, Ledergerber B, Bonhoeffer S, Günthard HF; Swiss HIV Cohort Study. von Wyl V, et al. Among authors: boni j. J Infect Dis. 2011 Oct 1;204(7):1095-103. doi: 10.1093/infdis/jir491. J Infect Dis. 2011. PMID: 21881125 Free article.
Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B.
Scherrer AU, Ledergerber B, von Wyl V, Böni J, Yerly S, Klimkait T, Bürgisser P, Rauch A, Hirschel B, Cavassini M, Elzi L, Vernazza PL, Bernasconi E, Held L, Günthard HF; Swiss HIV Cohort Study. Scherrer AU, et al. Among authors: boni j. Clin Infect Dis. 2011 Dec;53(11):1143-52. doi: 10.1093/cid/cir669. Epub 2011 Oct 13. Clin Infect Dis. 2011. PMID: 21998284 Free article.
491 results