Swofford DL - Search Results

1

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.

Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. Ayres DL, et al. Among authors: swofford dl. Syst Biol. 2012 Jan;61(1):170-3. doi: 10.1093/sysbio/syr100. Epub 2011 Oct 1. Syst Biol. 2012. PMID: 21963610 Free PMC article.

2

Hastings ratio of the LOCAL proposal used in Bayesian phylogenetics.

Holder MT, Lewis PO, Swofford DL, Larget B. Holder MT, et al. Among authors: swofford dl. Syst Biol. 2005 Dec;54(6):961-5. doi: 10.1080/10635150500354670. Syst Biol. 2005. PMID: 16385776 No abstract available.

3

Phycas: software for Bayesian phylogenetic analysis.

Lewis PO, Holder MT, Swofford DL. Lewis PO, et al. Among authors: swofford dl. Syst Biol. 2015 May;64(3):525-31. doi: 10.1093/sysbio/syu132. Epub 2015 Jan 9. Syst Biol. 2015. PMID: 25577605

4

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics.

Ayres DL, Cummings MP, Baele G, Darling AE, Lewis PO, Swofford DL, Huelsenbeck JP, Lemey P, Rambaut A, Suchard MA. Ayres DL, et al. Among authors: swofford dl. Syst Biol. 2019 Nov 1;68(6):1052-1061. doi: 10.1093/sysbio/syz020. Syst Biol. 2019. PMID: 31034053 Free PMC article.

5

The akaike information criterion will not choose the no common mechanism model.

Holder MT, Lewis PO, Swofford DL. Holder MT, et al. Among authors: swofford dl. Syst Biol. 2010 Jul;59(4):477-85. doi: 10.1093/sysbio/syq028. Epub 2010 May 31. Syst Biol. 2010. PMID: 20547783 No abstract available.

6

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods.

Swofford DL, Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS. Swofford DL, et al. Syst Biol. 2001 Aug;50(4):525-39. Syst Biol. 2001. PMID: 12116651 No abstract available.

7

A compound poisson process for relaxing the molecular clock.

Huelsenbeck JP, Larget B, Swofford D. Huelsenbeck JP, et al. Genetics. 2000 Apr;154(4):1879-92. doi: 10.1093/genetics/154.4.1879. Genetics. 2000. PMID: 10747076 Free PMC article.

8

Hobgoblin of phylogenetics?

Hillis DM, Huelsenbeck JP, Swofford DL. Hillis DM, et al. Among authors: swofford dl. Nature. 1994 Jun 2;369(6479):363-4. doi: 10.1038/369363a0. Nature. 1994. PMID: 8196763 No abstract available.

9

Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation.

Sullivan J, Abdo Z, Joyce P, Swofford DL. Sullivan J, et al. Among authors: swofford dl. Mol Biol Evol. 2005 Jun;22(6):1386-92. doi: 10.1093/molbev/msi129. Epub 2005 Mar 9. Mol Biol Evol. 2005. PMID: 15758203

10

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.

Nylander JA, Wilgenbusch JC, Warren DL, Swofford DL. Nylander JA, et al. Among authors: swofford dl. Bioinformatics. 2008 Feb 15;24(4):581-3. doi: 10.1093/bioinformatics/btm388. Epub 2007 Aug 30. Bioinformatics. 2008. PMID: 17766271

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