Laurila K - Search Results

1

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis.

Thorsen K, Schepeler T, Øster B, Rasmussen MH, Vang S, Wang K, Hansen KQ, Lamy P, Pedersen JS, Eller A, Mansilla F, Laurila K, Wiuf C, Laurberg S, Dyrskjøt L, Ørntoft TF, Andersen CL. Thorsen K, et al. Among authors: laurila k. BMC Genomics. 2011 Oct 14;12:505. doi: 10.1186/1471-2164-12-505. BMC Genomics. 2011. PMID: 21999571 Free PMC article.

2

A beta-mixture model for dimensionality reduction, sample classification and analysis.

Laurila K, Oster B, Andersen CL, Lamy P, Orntoft T, Yli-Harja O, Wiuf C. Laurila K, et al. BMC Bioinformatics. 2011 May 27;12:215. doi: 10.1186/1471-2105-12-215. BMC Bioinformatics. 2011. PMID: 21619656 Free PMC article.

3

Prediction of disease-related mutations affecting protein localization.

Laurila K, Vihinen M. Laurila K, et al. BMC Genomics. 2009 Mar 23;10:122. doi: 10.1186/1471-2164-10-122. BMC Genomics. 2009. PMID: 19309509 Free PMC article.

4

A protein-protein interaction guided method for competitive transcription factor binding improves target predictions.

Laurila K, Yli-Harja O, Lähdesmäki H. Laurila K, et al. Nucleic Acids Res. 2009 Dec;37(22):e146. doi: 10.1093/nar/gkp789. Nucleic Acids Res. 2009. PMID: 19786498 Free PMC article.

5

ESTOOLS Data@Hand: human stem cell gene expression resource.

Kong L, Aho KL, Granberg K, Lund R, Järvenpää L, Seppälä J, Gokhale P, Leinonen K, Hahne L, Mäkelä J, Laurila K, Pukkila H, Närvä E, Yli-Harja O, Andrews PW, Nykter M, Lahesmaa R, Roos C, Autio R. Kong L, et al. Among authors: laurila k. Nat Methods. 2013 Sep;10(9):814-5. doi: 10.1038/nmeth.2576. Nat Methods. 2013. PMID: 23985726 No abstract available.

6

PROlocalizer: integrated web service for protein subcellular localization prediction.

Laurila K, Vihinen M. Laurila K, et al. Amino Acids. 2011 Mar;40(3):975-80. doi: 10.1007/s00726-010-0724-y. Epub 2010 Sep 2. Amino Acids. 2011. PMID: 20811800 Free PMC article.

7

Systematic analysis of disease-related regulatory mutation classes reveals distinct effects on transcription factor binding.

Laurila K, Lähdesmäki H. Laurila K, et al. In Silico Biol. 2009;9(4):209-24. In Silico Biol. 2009. PMID: 20109151

8

A linear model for transcription factor binding affinity prediction in protein binding microarrays.

Annala M, Laurila K, Lähdesmäki H, Nykter M. Annala M, et al. Among authors: laurila k. PLoS One. 2011;6(5):e20059. doi: 10.1371/journal.pone.0020059. Epub 2011 May 26. PLoS One. 2011. PMID: 21637853 Free PMC article.

9

Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming.

Elo LL, Järvenpää H, Tuomela S, Raghav S, Ahlfors H, Laurila K, Gupta B, Lund RJ, Tahvanainen J, Hawkins RD, Oresic M, Lähdesmäki H, Rasool O, Rao KV, Aittokallio T, Lahesmaa R. Elo LL, et al. Among authors: laurila k. Immunity. 2010 Jun 25;32(6):852-62. doi: 10.1016/j.immuni.2010.06.011. Immunity. 2010. PMID: 20620947 Free article.

10

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium; Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR. Weirauch MT, et al. Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27. Nat Biotechnol. 2013. PMID: 23354101 Free PMC article.

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