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SADI, SHARE, and the in silico scientific method.
Wilkinson MD, McCarthy L, Vandervalk B, Withers D, Kawas E, Samadian S. Wilkinson MD, et al. Among authors: vandervalk b. BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S7. doi: 10.1186/1471-2105-11-S12-S7. BMC Bioinformatics. 2010. PMID: 21210986 Free PMC article.
Moby and Moby 2: creatures of the deep (web).
Vandervalk BP, McCarthy EL, Wilkinson MD. Vandervalk BP, et al. Brief Bioinform. 2009 Mar;10(2):114-28. doi: 10.1093/bib/bbn051. Epub 2009 Jan 16. Brief Bioinform. 2009. PMID: 19151099
SPARQL assist language-neutral query composer.
McCarthy L, Vandervalk B, Wilkinson M. McCarthy L, et al. Among authors: vandervalk b. BMC Bioinformatics. 2012 Jan 25;13 Suppl 1(Suppl 1):S2. doi: 10.1186/1471-2105-13-S1-S2. BMC Bioinformatics. 2012. PMID: 22373327 Free PMC article.
DIDA: Distributed Indexing Dispatched Alignment.
Mohamadi H, Vandervalk BP, Raymond A, Jackman SD, Chu J, Breshears CP, Birol I. Mohamadi H, et al. PLoS One. 2015 Apr 29;10(4):e0126409. doi: 10.1371/journal.pone.0126409. eCollection 2015. PLoS One. 2015. PMID: 25923767 Free PMC article.
Tigmint: correcting assembly errors using linked reads from large molecules.
Jackman SD, Coombe L, Chu J, Warren RL, Vandervalk BP, Yeo S, Xue Z, Mohamadi H, Bohlmann J, Jones SJM, Birol I. Jackman SD, et al. Among authors: vandervalk bp. BMC Bioinformatics. 2018 Oct 26;19(1):393. doi: 10.1186/s12859-018-2425-6. BMC Bioinformatics. 2018. PMID: 30367597 Free PMC article.
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.
Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ. Birol I, et al. Among authors: vandervalk bp. Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22. Bioinformatics. 2013. PMID: 23698863 Free PMC article.
22 results