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clusterMaker: a multi-algorithm clustering plugin for Cytoscape.
Morris JH, Apeltsin L, Newman AM, Baumbach J, Wittkop T, Su G, Bader GD, Ferrin TE. Morris JH, et al. BMC Bioinformatics. 2011 Nov 9;12:436. doi: 10.1186/1471-2105-12-436. BMC Bioinformatics. 2011. PMID: 22070249 Free PMC article.
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.
Nord AS, Chang PJ, Conklin BR, Cox AV, Harper CA, Hicks GG, Huang CC, Johns SJ, Kawamoto M, Liu S, Meng EC, Morris JH, Rossant J, Ruiz P, Skarnes WC, Soriano P, Stanford WL, Stryke D, von Melchner H, Wurst W, Yamamura K, Young SG, Babbitt PC, Ferrin TE. Nord AS, et al. Among authors: morris jh. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D642-8. doi: 10.1093/nar/gkj097. Nucleic Acids Res. 2006. PMID: 16381950 Free PMC article.
structureViz: linking Cytoscape and UCSF Chimera.
Morris JH, Huang CC, Babbitt PC, Ferrin TE. Morris JH, et al. Bioinformatics. 2007 Sep 1;23(17):2345-7. doi: 10.1093/bioinformatics/btm329. Epub 2007 Jul 10. Bioinformatics. 2007. PMID: 17623706
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Partitioning biological data with transitivity clustering.
Wittkop T, Emig D, Lange S, Rahmann S, Albrecht M, Morris JH, Böcker S, Stoye J, Baumbach J. Wittkop T, et al. Among authors: morris jh. Nat Methods. 2010 Jun;7(6):419-20. doi: 10.1038/nmeth0610-419. Nat Methods. 2010. PMID: 20508635 No abstract available.
166 results