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Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.
Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, Dyer DW, Inzana TJ. Siddaramappa S, et al. Among authors: orvis j. BMC Genomics. 2011 Nov 23;12:570. doi: 10.1186/1471-2164-12-570. BMC Genomics. 2011. PMID: 22111657 Free PMC article.
Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms.
Tretina K, Pelle R, Orvis J, Gotia HT, Ifeonu OO, Kumari P, Palmateer NC, Iqbal SBA, Fry LM, Nene VM, Daubenberger CA, Bishop RP, Silva JC. Tretina K, et al. Among authors: orvis j. BMC Genomics. 2020 Apr 3;21(1):279. doi: 10.1186/s12864-020-6683-0. BMC Genomics. 2020. PMID: 32245418 Free PMC article.
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC. Fedorova ND, et al. Among authors: orvis j. PLoS Genet. 2008 Apr 11;4(4):e1000046. doi: 10.1371/journal.pgen.1000046. PLoS Genet. 2008. PMID: 18404212 Free PMC article.
The genome sequence of four isolates from the family Lichtheimiaceae.
Chibucos MC, Etienne KA, Orvis J, Lee H, Daugherty S, Lockhart SR, Ibrahim AS, Bruno VM. Chibucos MC, et al. Among authors: orvis j. Pathog Dis. 2015 Jul;73(5):ftv024. doi: 10.1093/femspd/ftv024. Epub 2015 Apr 9. Pathog Dis. 2015. PMID: 25857734 Free PMC article.
Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.
Ifeonu OO, Chibucos MC, Orvis J, Su Q, Elwin K, Guo F, Zhang H, Xiao L, Sun M, Chalmers RM, Fraser CM, Zhu G, Kissinger JC, Widmer G, Silva JC. Ifeonu OO, et al. Among authors: orvis j. Pathog Dis. 2016 Oct;74(7):ftw080. doi: 10.1093/femspd/ftw080. Epub 2016 Aug 12. Pathog Dis. 2016. PMID: 27519257 Free PMC article.
49 results