Hofmann O - Search Results

1

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.

Ho Sui SJ, Begley K, Reilly D, Chapman B, McGovern R, Rocca-Sera P, Maguire E, Altschuler GM, Hansen TA, Sompallae R, Krivtsov A, Shivdasani RA, Armstrong SA, Culhane AC, Correll M, Sansone SA, Hofmann O, Hide W. Ho Sui SJ, et al. Among authors: hofmann o. Nucleic Acids Res. 2012 Jan;40(Database issue):D984-91. doi: 10.1093/nar/gkr1051. Epub 2011 Nov 24. Nucleic Acids Res. 2012. PMID: 22121217 Free PMC article.

2

Stem cell-like gene expression in ovarian cancer predicts type II subtype and prognosis.

Schwede M, Spentzos D, Bentink S, Hofmann O, Haibe-Kains B, Harrington D, Quackenbush J, Culhane AC. Schwede M, et al. Among authors: hofmann o. PLoS One. 2013;8(3):e57799. doi: 10.1371/journal.pone.0057799. Epub 2013 Mar 11. PLoS One. 2013. PMID: 23536770 Free PMC article.

3

Pathprinting: An integrative approach to understand the functional basis of disease.

Altschuler GM, Hofmann O, Kalatskaya I, Payne R, Ho Sui SJ, Saxena U, Krivtsov AV, Armstrong SA, Cai T, Stein L, Hide WA. Altschuler GM, et al. Among authors: hofmann o. Genome Med. 2013 Jul 26;5(7):68. doi: 10.1186/gm472. eCollection 2013. Genome Med. 2013. PMID: 23890051 Free PMC article.

4

The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework.

Ho Sui S, Merrill E, Gehlenborg N, Haseley P, Sytchev I, Park R, Rocca-Serra P, Corlosquet S, Gonzalez-Beltran A, Maguire E, Hofmann O, Park P, Das S, Sansone SA, Hide W. Ho Sui S, et al. Among authors: hofmann o. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:70. eCollection 2013. AMIA Jt Summits Transl Sci Proc. 2013. PMID: 24303302

5

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.

Dimont E, Hofmann O, Ho Sui SJ, Forrest AR, Kawaji H; FANTOM Consortium; Hide W. Dimont E, et al. Among authors: hofmann o. Bioinformatics. 2014 Apr 15;30(8):1183-1184. doi: 10.1093/bioinformatics/btu125. Epub 2014 Mar 27. Bioinformatics. 2014. PMID: 24675730

6

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor C, Begley K, Field D, Harris S, Hide W, Hofmann O, Neumann S, Sterk P, Tong W, Sansone SA. Rocca-Serra P, et al. Among authors: hofmann o. Bioinformatics. 2010 Sep 15;26(18):2354-6. doi: 10.1093/bioinformatics/btq415. Epub 2010 Aug 2. Bioinformatics. 2010. PMID: 20679334 Free PMC article.

7

A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells.

Sompallae R, Hofmann O, Maher CA, Gedye C, Behren A, Vitezic M, Daub CO, Devalle S, Caballero OL, Carninci P, Hayashizaki Y, Lawlor ER, Cebon J, Hide W. Sompallae R, et al. Among authors: hofmann o. Front Genet. 2013 Oct 29;4:209. doi: 10.3389/fgene.2013.00209. eCollection 2013. Front Genet. 2013. PMID: 24194746 Free PMC article.

8

Sequencing of captive target transcripts identifies the network of regulated genes and functions of primate-specific miR-522.

Tan SM, Kirchner R, Jin J, Hofmann O, McReynolds L, Hide W, Lieberman J. Tan SM, et al. Among authors: hofmann o. Cell Rep. 2014 Aug 21;8(4):1225-39. doi: 10.1016/j.celrep.2014.07.023. Epub 2014 Aug 14. Cell Rep. 2014. PMID: 25131211 Free article.

9

Iterative sorting reveals CD133+ and CD133- melanoma cells as phenotypically distinct populations.

Grasso C, Anaka M, Hofmann O, Sompallae R, Broadley K, Hide W, Berridge MV, Cebon J, Behren A, McConnell MJ. Grasso C, et al. Among authors: hofmann o. BMC Cancer. 2016 Sep 9;16(1):726. doi: 10.1186/s12885-016-2759-2. BMC Cancer. 2016. PMID: 27613604 Free PMC article.

10

Mycoplasma Infection Alters Cancer Stem Cell Properties in Vitro.

Gedye C, Cardwell T, Dimopoulos N, Tan BS, Jackson H, Svobodová S, Anaka M, Behren A, Maher C, Hofmann O, Hide W, Caballero O, Davis ID, Cebon J. Gedye C, et al. Among authors: hofmann o. Stem Cell Rev Rep. 2016 Feb;12(1):156-61. doi: 10.1007/s12015-015-9630-8. Stem Cell Rev Rep. 2016. PMID: 26514153

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