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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: castagnoli l. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Control of ColE1 plasmid replication by antisense RNA.
Cesareni G, Helmer-Citterich M, Castagnoli L. Cesareni G, et al. Among authors: castagnoli l. Trends Genet. 1991 Jul;7(7):230-5. doi: 10.1016/0168-9525(91)90370-6. Trends Genet. 1991. PMID: 1887504 Review.
Methods to reveal domain networks.
Santonico E, Castagnoli L, Cesareni G. Santonico E, et al. Among authors: castagnoli l. Drug Discov Today. 2005 Aug 15;10(16):1111-7. doi: 10.1016/S1359-6446(05)03513-0. Drug Discov Today. 2005. PMID: 16182196 Review.
DOMINO: a database of domain-peptide interactions.
Ceol A, Chatr-aryamontri A, Santonico E, Sacco R, Castagnoli L, Cesareni G. Ceol A, et al. Among authors: castagnoli l. Nucleic Acids Res. 2007 Jan;35(Database issue):D557-60. doi: 10.1093/nar/gkl961. Epub 2006 Nov 29. Nucleic Acids Res. 2007. PMID: 17135199 Free PMC article.
MINT: the Molecular INTeraction database.
Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G. Chatr-aryamontri A, et al. Among authors: castagnoli l. Nucleic Acids Res. 2007 Jan;35(Database issue):D572-4. doi: 10.1093/nar/gkl950. Epub 2006 Nov 29. Nucleic Acids Res. 2007. PMID: 17135203 Free PMC article.
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.
Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H. Chatr-aryamontri A, et al. Among authors: castagnoli l. Genome Biol. 2008;9 Suppl 2(Suppl 2):S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834496 Free PMC article.
VirusMINT: a viral protein interaction database.
Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G. Chatr-aryamontri A, et al. Among authors: castagnoli l. Nucleic Acids Res. 2009 Jan;37(Database issue):D669-73. doi: 10.1093/nar/gkn739. Epub 2008 Oct 30. Nucleic Acids Res. 2009. PMID: 18974184 Free PMC article.
158 results