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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: gonzalez g. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Efficient extraction of protein-protein interactions from full-text articles.
Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G. Hakenberg J, et al. Among authors: gonzalez g. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20498514 Free article.
Inter-species normalization of gene mentions with GNAT.
Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G. Hakenberg J, et al. Among authors: gonzalez g. Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299. Bioinformatics. 2008. PMID: 18689813
Text and data mining for biomedical discovery.
Gonzalez G, Cohen KB, Greene CS, Hahn U, Kann MG, Leaman R, Shah N, Ye J. Gonzalez G, et al. Pac Symp Biocomput. 2013;2013:368-72. doi: 10.1142/9789814583220_0030. Pac Symp Biocomput. 2013. PMID: 23424141 Free PMC article.
Overview of the gene ontology task at BioCreative IV.
Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z. Mao Y, et al. Among authors: gonzalez g. Database (Oxford). 2014 Aug 25;2014:bau086. doi: 10.1093/database/bau086. Print 2014. Database (Oxford). 2014. PMID: 25157073 Free PMC article.
Enhancing phylogeography by improving geographical information from GenBank.
Scotch M, Sarkar IN, Mei C, Leaman R, Cheung KH, Ortiz P, Singraur A, Gonzalez G. Scotch M, et al. Among authors: gonzalez g. J Biomed Inform. 2011 Dec;44 Suppl 1(Suppl 1):S44-S47. doi: 10.1016/j.jbi.2011.06.005. Epub 2011 Jun 24. J Biomed Inform. 2011. PMID: 21723960 Free PMC article.
The GNAT library for local and remote gene mention normalization.
Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM. Hakenberg J, et al. Among authors: gonzalez g. Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3. Bioinformatics. 2011. PMID: 21813477 Free PMC article.
2,026 results