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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: leaman r. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Inter-species normalization of gene mentions with GNAT.
Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G. Hakenberg J, et al. Among authors: leaman r. Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299. Bioinformatics. 2008. PMID: 18689813
Overview of BioCreative II gene normalization.
Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L. Morgan AA, et al. Among authors: leaman r. Genome Biol. 2008;9 Suppl 2(Suppl 2):S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834494 Free PMC article.
Efficient extraction of protein-protein interactions from full-text articles.
Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G. Hakenberg J, et al. Among authors: leaman r. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20498514 Free article.
Text and data mining for biomedical discovery.
Gonzalez G, Cohen KB, Greene CS, Hahn U, Kann MG, Leaman R, Shah N, Ye J. Gonzalez G, et al. Among authors: leaman r. Pac Symp Biocomput. 2013;2013:368-72. doi: 10.1142/9789814583220_0030. Pac Symp Biocomput. 2013. PMID: 23424141 Free PMC article.
43 results