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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: licata l. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
Deutsch EW, Vizcaíno JA, Jones AR, Binz PA, Lam H, Klein J, Bittremieux W, Perez-Riverol Y, Tabb DL, Walzer M, Ricard-Blum S, Hermjakob H, Neumann S, Mak TD, Kawano S, Mendoza L, Van Den Bossche T, Gabriels R, Bandeira N, Carver J, Pullman B, Sun Z, Hoffmann N, Shofstahl J, Zhu Y, Licata L, Quaglia F, Tosatto SCE, Orchard SE. Deutsch EW, et al. Among authors: licata l. J Proteome Res. 2023 Feb 3;22(2):287-301. doi: 10.1021/acs.jproteome.2c00637. Epub 2023 Jan 10. J Proteome Res. 2023. PMID: 36626722 Free PMC article. Review.
Protein interactions: integration leads to belief.
Chatr-Aryamontri A, Ceol A, Licata L, Cesareni G. Chatr-Aryamontri A, et al. Among authors: licata l. Trends Biochem Sci. 2008 Jun;33(6):241-2; author reply 242-3. doi: 10.1016/j.tibs.2008.04.002. Epub 2008 May 9. Trends Biochem Sci. 2008. PMID: 18472267 No abstract available.
Searching the MINT database for protein interaction information.
Cesareni G, Chatr-Aryamontri A, Licata L, Ceol A. Cesareni G, et al. Among authors: licata l. Curr Protoc Bioinformatics. 2008 Jun;Chapter 8:8.5.1-8.5.13. doi: 10.1002/0471250953.bi0805s22. Curr Protoc Bioinformatics. 2008. PMID: 18551417 Review.
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.
Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H. Chatr-aryamontri A, et al. Among authors: licata l. Genome Biol. 2008;9 Suppl 2(Suppl 2):S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834496 Free PMC article.
MINT, the molecular interaction database: 2009 update.
Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G. Ceol A, et al. Among authors: licata l. Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. doi: 10.1093/nar/gkp983. Epub 2009 Nov 6. Nucleic Acids Res. 2010. PMID: 19897547 Free PMC article.
Recurated protein interaction datasets.
Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, Eisenberg D, Cesareni G, Hermjakob H. Salwinski L, et al. Among authors: licata l. Nat Methods. 2009 Dec;6(12):860-1. doi: 10.1038/nmeth1209-860. Nat Methods. 2009. PMID: 19935838 No abstract available.
111 results